BAC Information

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BAC

Clone NameMSMg01-440L13
Chromosome7 (Build37)
Map Location 52,087,263 - 52,269,783
singlet/doubletdoublet
Overlap geneIl4i1, Tbc1d17, Akt1s1, Pnkp, Ptov1, Med25, Fuz, Ap2a1, Stk22s1, Cpt1c, Prmt1, Bcl2l12, Irf3, AI480556
Upstream geneKlk5, Klk4, Klk2-ps, Klk15, Klk1b7-ps, Klk1b8, Klk1b1, Klk1b9, Klk1b10-ps, Klk1b11, LOC100039713, Klk1b26, Klk1b18-ps, Klk1b27, Klk1b14-ps, Klk1b15-ps, Klk1b21, Klk1b22, Klk1b16, Klk1b24, Klk1b3, Klk1b4, Klk1b5, Klk1, 1700028J19Rik, LOC668661, Acpt, LOC628854, EG638453, Clec11a, Shank1, 1700008O03Rik, Syt3, Lrrc4b, 0610012D14Rik, Josd2, 2310044H10Rik, 1700021P22Rik, Mybpc2, Spib, Pold1, Nr1h2, Napsa, Kcnc3, Myh14, 1700023D19Rik, Zfp473, Vrk3, EG628904, Atf5, Nup62
Downstream geneRras, Prr12, Prrg2, Nosip, Rcn3, Fcgrt, Rps11, Rnu35b, Rpl13a, Rnu35a, Rnu34, Rnu33, Rnu32, Flt3l, Aldh16a1, Pih1d1, Slc17a7, Gm581, LOC100039953, Tifp39, BC050196, Dkkl1, Tead2, Cd37, Slc6a16, 1700039E15Rik, Trpm4, LOC100040970, Hrc, 2410127E16Rik, Mtag2, Lin7b, Snrp70, Kcna7, Ntf5, LOC100040019, Lhb, Ruvbl2, Gys1, Ftl1, Bax, Dhdh, Nucb1, Tulp2, Myd116, Plekha4, Hsd17b14, Bcat2, Fgf21, Fut1, Izumo1, Rasip1, 5430432N15Rik, Fut2, Sec1, Gm484, Car11, Dbp, Sphk2, Rpl18, 4930403C10Rik, Spaca4, Sult2b1, EG545963, Lmtk3, Pscd2, Kcnj14, Grwd1, Grin2d, Kdelr1, Syngr4, Tmem143, Emp3, BC013491, LOC677321, Abcc6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-440L13.T7 (MSMg01no440_l13.b1)MSMg01-440L13.TJ (MSMg01no440_l13.g1)
ACCAG530770AG530771
length747739
length of high quality
(start - end)		449 (79 - 527)433 (81 - 513)
definitionCHROMAT_FILE: MSMg01no440_l13.b1 PHD_FILE: MSMg01no440_l13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:07:16 2005CHROMAT_FILE: MSMg01no440_l13.g1 PHD_FILE: MSMg01no440_l13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:07:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,087,263 - 52,087,714)(52,269,351 - 52,269,783)
sequence
NNNTTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTATTTTGTACCAAGGACCTGCATGTATGCTAAGTGCAC
ACTCTGTCCTTGCATTACTACATCCTAGTGACCTTGTAGTTTAGAAACAT
TGAAATTATGCCCTGACATCTGCCCTACTTTGAAGAAAAGAGACTAGATG
TCTGTGCTGGGGGAATTGGGGAGGGGTGCCCAGGATGGCTATTGGCAACC
TGCTGGGCATGCCCAGGTTACACTTACAATTGCAGTTTCCTTCTCTAGGA
AGAACACAGGCAGATGCCCTGCCTTGCTGTTTGGTCTCATTAAATCACCA
TGAAGACAGCAAAGGTGACTGATTGCATGGGGAGCCTATTCCACACCTCT
CCCTGGATAGCCAAGGGCCAGTCTGACCCAACATGGGGGAACTAGCCTGG
TCTACTGTGAAACTCAAGAAAGGGGGAAAAAGTGTAAAATGTCAAATAAG
AGGAAGTTGTGTCCATGTCACGCTAAGGCCAAGAGGGAGCTGGAGTTGAA
ACTCCACCCCTCTGTCCCCTGATGTCTGCCCTACAAAGGCTTTGCTCTAT
ACTGAGCAGCCCAGTAAACCAGGGGTAAGAATGATTGTTGCTTTGCTTTT
GGGAAACTTGTTCTTTTTTTTTCTTAAAACCTTTCTACCTCTGCCTTTTT
TTATCGTCTGGATTCTAACGTCATTGCCCCTCTCCCCTACCTTCTTT

TTTTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAGATTAGGTGTTTTCAGA
GTAGCAGGTTTGACAGCTGTGGGGAGGTTTACAGCTGTGATGTTCATGTT
TTCTGAAGCCTCAATCAAGACATCCACCAGTCTGAAGGATGCTCTTTCAA
CTACCTGACTGGGCACTCAAAGCTCAGAATTCCCGTGACATCACCGAGGC
TTTGGCCATGCTTCCACAGGACAGGCAGCTGGGTGATAGGCAAGTGTCCC
AATGGGGCTGGGAGGACAGCATGCCTTTCTGATTCTTGGCATTTTTGTTT
TAAAAGCGGTGTGGTGGTTATGTAGATCATACTATCATAGTTGTATCTCG
TGGCTGTAAATAAAGCTCTTGGGCTCCTCATCATGGAGGATAATGAATGC
TGTGTGAACCTACGGTACCTGTTACAGAGTACCCCTGAGCATGTCGGCAC
ATTCCCCGCTGTGGGTAAAGGGTCTTTTCTGAGACCGAAGCATGTTGCTC
TTATAATCTTGACACCCCGATATCAGGCTTGATTTAGCATCTATTGGTCT
GTCTCTGCTTAATTAATTGAAACTTTCCCCCATTAATCTTTACACCCTCT
CCTCTTTCCCTCCTCTTCTCTTTCTTTTTTGTCTATATCCAACATTTACC
GCCTTCCATACCTATCTCTACTTTCTCATACTATTATCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no440_l13.b1 MSMg01no440_l13.b1 CHROMAT_FILE:
MSMg01no440_l13.b1 PHD_FILE: MSMg01no440_l13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:16 2005
         (449 letters)



>mm_chr7_52087063_52087914
          Length = 852

 Score =  789 bits (408), Expect = 0.0
 Identities = 440/454 (96%), Gaps = 7/454 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctgcatgtatgctaagtgcacactctgtccttgcattactacatcctagtgaccttgta 60
           ||||||||||||||||||||||||||||||| |||  |||||||||||||||||||||||
Sbjct: 201 cctgcatgtatgctaagtgcacactctgtccctgc--tactacatcctagtgaccttgta 258

                                                                       
Query: 61  gtttagaaacattgaaattatgccctgacatctgccctactttgaagaaaagagactaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gtttagaaacattgaaattatgccctgacatctgccctactttgaagaaaagagactaga 318

                                                                       
Query: 121 tgtctgtgctgggggaattggggaggggtgcccaggatggc-----tattggcaacctgc 175
           | |||||||||||||||||||||||||||||||||||||||     ||||||||||||||
Sbjct: 319 tctctgtgctgggggaattggggaggggtgcccaggatggcaatgctattggcaacctgc 378

                                                                       
Query: 176 tgggcatgcccaggttacacttacaattgcagtttccttctctaggaagaacacaggcag 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tgggcatgcccaggttacacttacaattgcagtttccttctctaggaagaacacaggcag 438

                                                                       
Query: 236 atgccctgccttgctgtttggtctcattaaatcaccatgaagacagcaaaggtgactgat 295
           ||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 atgccctgccttgctgaccggtctcattaaatcaccatgaagacagcaaaggtgactgat 498

                                                                       
Query: 296 tgcatggggagcctattccacacctctccctggatagccaagggccagtctgacccaaca 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tgcatggggagcctattccacacctctccctggatagccaagggccagtctgacccaaca 558

                                                                       
Query: 356 tgggggaactagcctggtctactgtgaaactcaagaaagggggaaaaagtgtaaaatgtc 415
           ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tgggggaactagcctggcctagtgtgaaactcaagaaagggggaaaaagtgtaaaatgtc 618

                                             
Query: 416 aaataagaggaagttgtgtccatgtcacgctaag 449
           ||||||||||||||||||||||||||||||||||
Sbjct: 619 aaataagaggaagttgtgtccatgtcacgctaag 652


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 852
Length adjustment: 10
Effective length of query: 439
Effective length of database: 842
Effective search space:   369638
Effective search space used:   369638
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no440_l13.g1 MSMg01no440_l13.g1 CHROMAT_FILE:
MSMg01no440_l13.g1 PHD_FILE: MSMg01no440_l13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:16 2005
         (433 letters)



>mm_chr7_52269151_52269983
          Length = 833

 Score =  822 bits (425), Expect = 0.0
 Identities = 431/433 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caagattaggtgttttcagagtagcaggtttgacagctgtggggaggtttacagctgtga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 caagattaggtgttttcagagtagcaggtttgacagctgtggggaggtttacagctgtga 574

                                                                       
Query: 61  tgttcatgttttctgaagcctcaatcaagacatccaccagtctgaaggatgctctttcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 tgttcatgttttctgaagcctcaatcaagacatccaccagtctgaaggatgctctttcaa 514

                                                                       
Query: 121 ctacctgactgggcactcaaagctcagaattcccgtgacatcaccgaggctttggccatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 ctacctgactgggcactcaaagctcagaattcccgtgacatcaccgaggctttggccatg 454

                                                                       
Query: 181 cttccacaggacaggcagctgggtgataggcaagtgtcccaatggggctgggaggacagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 cttccacaggacaggcagctgggtgataggcaagtgtcccaatggggctgggaggacagc 394

                                                                       
Query: 241 atgcctttctgattcttggcatttttgttttaaaagcggtgtggtggttatgtagatcat 300
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 atgcctttctgaaacttggcatttttgttttaaaagcggtgtggtggttatgtagatcat 334

                                                                       
Query: 301 actatcatagttgtatctcgtggctgtaaataaagctcttgggctcctcatcatggagga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 actatcatagttgtatctcgtggctgtaaataaagctcttgggctcctcatcatggagga 274

                                                                       
Query: 361 taatgaatgctgtgtgaacctacggtacctgttacagagtacccctgagcatgtcggcac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 taatgaatgctgtgtgaacctacggtacctgttacagagtacccctgagcatgtcggcac 214

                        
Query: 421 attccccgctgtg 433
           |||||||||||||
Sbjct: 213 attccccgctgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 833
Length adjustment: 9
Effective length of query: 424
Effective length of database: 824
Effective search space:   349376
Effective search space used:   349376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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