BAC Information

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BAC

Clone NameMSMg01-440O23
Chromosome7 (Build37)
Map Location 92,553,177 - 92,553,507
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039239, Fah, Zfand6, 2610206C17Rik, EG620480, Olfr291, LOC666276, Olfr290, ENSMUSG00000070600, F830104D24Rik, LOC620641, EG620672, Vmn2r-ps68, EG620697, Vmn2r-ps69
Downstream geneLOC330581, LOC100039339, Vmn2r70, Vmn2r-ps72, EG233445, Vmn2r-ps74, EG244114, EG620928, EG546980, LOC666382, LOC637652, LOC637667, EG666418, LOC100039471, EG546981, Vmn2r-ps86, Vmn2r76, Olfr310, Olfr309, Olfr308, Olfr307, Olfr306-ps1, Olfr305, Olfr304, Olfr303
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-440O23.T7 (MSMg01no440_o23.b1)MSMg01-440O23.TJ (MSMg01no440_o23.g1)
ACCAG530934AG530935
length799741
length of high quality
(start - end)		426 (55 - 480)436 (85 - 520)
definitionCHROMAT_FILE: MSMg01no440_o23.b1 PHD_FILE: MSMg01no440_o23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:07:33 2005CHROMAT_FILE: MSMg01no440_o23.g1 PHD_FILE: MSMg01no440_o23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:07:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCTCCCTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTTAAGATGATATCCCTTTGATGGGATTTTATGTGAA
GATAAAGGAGAGATCCTGTTATTTTTTATGTGCGTAAAAGCTAAGAGTGG
AGTTTTACATGGGGCAAAGGAACATTCAATAAAGAATAAATATTTAAACT
AATAAGTATTATAGTTATATTTATAAATTAAGAGTAAGATTAAGAGCCAT
AGTGTAAGTGGGAAAATGTATTATTTACATCTGTCTACGGTTTCTCTGTG
TATCCCTGGTTGTCCTGGAAATCACTCTGTAGACCATCCTGGCCTCAAAC
TCAGAAATCTGCCTGCCTCTGCCTCCTAAGTGCTGGGATTAAAGGCATGC
ACCACCACTGCCTGGCTTGGATTACTGCTTTCTTAGAGATTAACTTCTTG
TGCTCTTTATATATTTTGGATATTAGCCCTCTATCAGATGTAGGGTTATT
GGAGAATTTTTTAACAATCTGTAGGATGCTAATTTGTTCTATTGACTGTG
ATTTTTTGCCTTATAGAAACCGTCCCAGCCTATGAAGTCCCCCTTAATCA
CCTTGTTGAACCTAAGGGCCTTAATCCCTGGCCTTGCCTATTTAAAAAAT
TTATATTTCCCCTTCTGCCCCAAAAACTTGGAGAGCCCTTTCCCACTTTC
CTCCTTATTTAAAATAAATCACACTTTGGGCGTGAAGGGGCGCAGCCCCA
CTCATACCATTTTTCACTTCTTCTTTGTTCCCGCCATAGCTATATTTTG

NNAATTTTTCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTGTAGCTCTTTA
CCTCATTTTTAATGAGGTTATTTGAATTTCTGGAGTCCAGCTTCTTGAAC
TATTTGTAGATGTTGGATATTATTCCACTATCAGATTTAGGATTGGTAAA
ATGCTTTCCTCCAATGTTGGGGGCCTTTTTGTCTTATTGAGTGTATCTTT
TGCCTTACAGGAGCTTTGCAATTTTATGAGGTCCCATTTTTCTATTCTTG
ATATTACAGCACAAGCCATTTTTGTTCTGTTCAGGAATTTTCCCCATGTT
CCCATATCTTTGAGGCTTTCCCCTACTTTCTCCTCTATAAATTTCAGTGT
CTCTGACTTTATGTGGAGTTCTTTGATCCACTTAAAGTTAAGCTTGTATA
AGGAGATAGGAATGGATCAATTCACATTCTTCTGCATAATAACCATCATT
TGAGCCTGCACCTTTTGTTGAAGATGCTGTCTTCTTTCCAAGGATGGNTT
TAGATCCCTTTTCAATATCAAGGGCCATAAGTGTGTGGGGTCAGTTCTGG
GGCTTCATTCTATTCCTTGATTTACCGGGGGCGCCGTACCGAACCTGGAA
TTGTTATGTTTTTGTGGGGGNCGGNNNACNCAACCACCCCAACCTTATCC
CCCCAATCTTTCTTCTTCGTTTTTTCCCCTTCAATCTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no440_o23.b1 MSMg01no440_o23.b1 CHROMAT_FILE:
MSMg01no440_o23.b1 PHD_FILE: MSMg01no440_o23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:33 2005
         (426 letters)



>mm_chr7_92553177_92554003
          Length = 827

 Score =  594 bits (307), Expect = e-174
 Identities = 325/331 (98%), Gaps = 1/331 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcttaagatgatatccctttgatgggattttatgtgaagataaaggagagatcct 63
           |||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ggaattctcaagatgagatacctttgatgggattttatgtgaagataaaggagagatcct 272

                                                                       
Query: 64  gtta-ttttttatgtgcgtaaaagctaagagtggagttttacatggggcaaaggaacatt 122
           |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 271 gttatttttttatgtgcgtaaaacctaagagtggagttttacatggggcaaaggaacatt 212

                                                                       
Query: 123 caataaagaataaatatttaaactaataagtattatagttatatttataaattaagagta 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 caataaagaataaatatttaaactaataagtattatagttatatttataaattaagagta 152

                                                                       
Query: 183 agattaagagccatagtgtaagtgggaaaatgtattatttacatctgtctacggtttctc 242
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 151 agattaagagccatagtgtaagtggaaaaatgtattatttacatctgtctacggtttctc 92

                                                                       
Query: 243 tgtgtatccctggttgtcctggaaatcactctgtagaccatcctggcctcaaactcagaa 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91  tgtgtatccctggttgtcctggaaatcactctgtagaccatcctggcctcaaactcagaa 32

                                          
Query: 303 atctgcctgcctctgcctcctaagtgctggg 333
           |||||||||||||||||||||||||||||||
Sbjct: 31  atctgcctgcctctgcctcctaagtgctggg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 827
Length adjustment: 9
Effective length of query: 417
Effective length of database: 818
Effective search space:   341106
Effective search space used:   341106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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