BAC Information

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BAC

Clone NameMSMg01-440P05
Chromosome7 (Build37)
Map Location 35,879,736 - 36,049,442
singlet/doubletdoublet
Overlap geneCebpa, Slc7a10, Wdr88
Upstream geneLOC100043868, Wtip, Sae2, LOC100043410, Pdcd2l, Gpi1, 4931406P16Rik, EG619734, Lsm14a, LOC668460, LOC668464, Kctd15, Chst8, Pepd, Cebpg
Downstream geneGpatch1, Rhpn2, C230052I12Rik, Ccdc123, Slc7a9, 2410004F06Rik, Nudt19, Rgs9bp, Ankrd27, Pdcd5, Dpy19l3, zfp507, LOC100043872, EG668988, LOC668507
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-440P05.T7 (MSMg01no440_p05.b1)MSMg01-440P05.TJ (MSMg01no440_p05.g1)
ACCAG530946AG530947
length783853
length of high quality
(start - end)		476 (73 - 548)213 (81 - 293)
definitionCHROMAT_FILE: MSMg01no440_p05.b1 PHD_FILE: MSMg01no440_p05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:07:34 2005CHROMAT_FILE: MSMg01no440_p05.g1 PHD_FILE: MSMg01no440_p05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:07:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,048,967 - 36,049,442)(35,879,736 - 35,879,948)
sequence
NNNTTTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCATTTGGTTACACTCCCAGCTGCCCTTATCTTCCACTGAG
CTTGGAAAAGGGCCTCCTGGGATTTCCTGAATGTGACTATATGCCCCAGG
GGGCAGGCGTTGGGAGCTGGGTGTGTGGAACTTAGCATTCACAACAGGCC
TGGGGCTACCATAAAGGCCACTGGTATGGCTTCAGTTTGGGAACCAGTCT
GGTGAGTAGCCCTTTACCATCTTTGGAGATTGTCCCCCATGTAATAAAGG
CAGATAATCACACCTTTACAGCCTGTGCAAACTGCCTTCCTGGAATTCAA
GTGTGGGCCAGGCAGAGTGTCCATGGAATTGGTCTTGCTTTTTTAAGCTT
CCAGGTCCTGGGCTCTGGTACACCTTTCTGGTAGACAACACTTTACGTGG
ATTGGTGTAGGCTATTGCTGTAAATGGTGAGCCCCAAGCTCTCCAAGAGA
AGGTTGGGGAACACCTGGCTTCCTTTGGACTTTGCCCCCAGCACCTTATT
ATCCCGTTCTTGACTGGCCCTGTCGCCCGTAGGAACTTGAATGCATGTGA
TGTTTGCTTTGCAAGCTCCCGCGTGTCCCGTGTGTCTGGATGTCCTGGTG
CCCCTCTTTAACTCCTAATAATTTTCTCTATTTTCCTTTTTTCCCCCTTT
CCTCTTTTGTCTCGTTCCTTCCTTCTCTTGTCTCCTTACACCCATCCTTT
TTCCTCTTCTCCCTTTCATTTCTCTCCCCCACC

NNNCCTATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCTGAGGTTGTCAACATC
TGTTAAGCTCACTATTAGGAGGATGGTAAAGAGCTCACCTCACTTTAAAA
GTTATCTGTGAGCACGGGATAAAGGTGCTAGAGAGGAAGAGGGGTACAGA
GAGGGAAAGGTAGAAGAGAGGAGGGCAGAGAGAGCGGCAGGGAAGGGAGA
GGGATTTACAGAAAGAGGAAAAAGGAGAGGGGAGGGGGGAGAGGTTTTTT
NTTTTNTTTTTGGGGTTTGTTTGTGGTTTTTTTTTTCTTTTTTGGCGTCT
TGTTTCTCGCTTCGCTTTTTTTTTGTTCCTCTTTGTGCGTCTGTTGGTGT
TGTTCCTCTTTTTTTCTCTCTTCGCCCCCCCCCCTNCATCCCTGTCTCCT
TTTCTTTTCTTTACTTTTCTTTCTTTGTTTCTTTTTGCTTTATTTCTTTT
CACCTACTCTCCATCATTTACTCTTTACTGTCTCTTTCCCCTCCTCTATT
TCTTCCTATCTATCTCCCATTTTTACTTCACCTCTCCACCTGCTGTTTTT
TTCCCTTTTCTTTAAACCGCTTGTACTTGTCTTTCGTTTGTCCTCTTTTT
TCTTTTTTTTTCTGTGTGGTATAAGATGTATGTTTGGTTCGTACTATATT
TGTATTTTTTGTTACTTTCTTTTCTTTCCTTCCTTCTACCTTTCTTATGT
CCCTCCTTTCTACTTTCTTTTCTCTTTTCTCCTCTCACTTCTTTCTTCCC
CCGTCCTTCTTCATCTCTTTTATTATTCTCTTCTTCTTTTTTTTTTTTTT
CCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no440_p05.b1 MSMg01no440_p05.b1 CHROMAT_FILE:
MSMg01no440_p05.b1 PHD_FILE: MSMg01no440_p05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:34 2005
         (476 letters)



>mm_chr7_36048767_36049642
          Length = 876

 Score =  897 bits (464), Expect = 0.0
 Identities = 473/476 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcccagctgcccttatcttccactgagcttggaaaagggcctcctgggatttcctgaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 ctcccagctgcccttatcttccactgagcttggaaaagggcctcctgggatttcctgaat 617

                                                                       
Query: 61  gtgactatatgccccagggggcaggcgttgggagctgggtgtgtggaacttagcattcac 120
           |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 616 gtgactatatgccccaggggacaggcgttgggaactgggtgtgtggaacttagcattcac 557

                                                                       
Query: 121 aacaggcctggggctaccataaaggccactggtatggcttcagtttgggaaccagtctgg 180
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 556 aacaggcctggggctaccataaaggccactggtatggcttcagtctgggaaccagtctgg 497

                                                                       
Query: 181 tgagtagccctttaccatctttggagattgtcccccatgtaataaaggcagataatcaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 tgagtagccctttaccatctttggagattgtcccccatgtaataaaggcagataatcaca 437

                                                                       
Query: 241 cctttacagcctgtgcaaactgccttcctggaattcaagtgtgggccaggcagagtgtcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 cctttacagcctgtgcaaactgccttcctggaattcaagtgtgggccaggcagagtgtcc 377

                                                                       
Query: 301 atggaattggtcttgcttttttaagcttccaggtcctgggctctggtacacctttctggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 atggaattggtcttgcttttttaagcttccaggtcctgggctctggtacacctttctggt 317

                                                                       
Query: 361 agacaacactttacgtggattggtgtaggctattgctgtaaatggtgagccccaagctct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 agacaacactttacgtggattggtgtaggctattgctgtaaatggtgagccccaagctct 257

                                                                   
Query: 421 ccaagagaaggttggggaacacctggcttcctttggactttgcccccagcacctta 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 ccaagagaaggttggggaacacctggcttcctttggactttgcccccagcacctta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space:   403556
Effective search space used:   403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no440_p05.g1 MSMg01no440_p05.g1 CHROMAT_FILE:
MSMg01no440_p05.g1 PHD_FILE: MSMg01no440_p05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:34 2005
         (213 letters)



>mm_chr7_35879536_35880148
          Length = 613

 Score =  412 bits (213), Expect = e-120
 Identities = 213/213 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcctgaggttgtcaacatctgttaagctcactattaggaggatggtaaagagctcacct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcctgaggttgtcaacatctgttaagctcactattaggaggatggtaaagagctcacct 260

                                                                       
Query: 61  cactttaaaagttatctgtgagcacgggataaaggtgctagagaggaagaggggtacaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cactttaaaagttatctgtgagcacgggataaaggtgctagagaggaagaggggtacaga 320

                                                                       
Query: 121 gagggaaaggtagaagagaggagggcagagagagcggcagggaagggagagggatttaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagggaaaggtagaagagaggagggcagagagagcggcagggaagggagagggatttaca 380

                                            
Query: 181 gaaagaggaaaaaggagaggggaggggggagag 213
           |||||||||||||||||||||||||||||||||
Sbjct: 381 gaaagaggaaaaaggagaggggaggggggagag 413


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 213
Length of database: 613
Length adjustment: 9
Effective length of query: 204
Effective length of database: 604
Effective search space:   123216
Effective search space used:   123216
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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