BAC Information

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BAC

Clone NameMSMg01-440P09
Chromosome7 (Build37)
Map Location 151,918,129 - 151,918,667
singlet/doubletsinglet
Overlap geneTmem16a
Upstream geneOsbpl5, Mrgprg, Mrgpre, Nadsyn1, Dhcr7, Gm498, Shank2, Cttn, Ppfia1, Fadd
Downstream geneLOC669079, LOC677315, Fgf3, Fgf4, Fgf15, Oraov1, Ccnd1, 1810010D01Rik, LOC100040049, Tpcn2, Mrgprf, Mrgprd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-440P09.T7 (MSMg01no440_p09.b1)MSMg01-440P09.TJ (MSMg01no440_p09.g1)
ACCAG530954AG530955
length849765
length of high quality
(start - end)
289 (49 - 337)539 (82 - 620)
definitionCHROMAT_FILE: MSMg01no440_p09.b1 PHD_FILE: MSMg01no440_p09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:07:35 2005CHROMAT_FILE: MSMg01no440_p09.g1 PHD_FILE: MSMg01no440_p09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:07:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATC
CGCGGAATTCTGAGGTTATCCGTGTGAGAAATCACCACCTGATTTAGCAG
TTAATTTCTTTCTTTCTTTTTTTTTTTTTTGTTTGTTTGTTTGTTTGTTT
CGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAGCTCACTTTGT
AGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCCGAG
TGCTGGGATTAAAGGTGTGCGCCTCCATGCCCGGCTTCTTTTTTATTTAT
TTATTTAATTTTTTTTTGTTTGTTTTTTGTTTTTTTGGTCTGCGAGGTAG
CGCTTCTCTGTTTATTCCTTCTTGTCCTTGTTTCTTTCTTTGCAGTACCT
TCCTCTCTTCTTATTCCTAGATACCCCCTGCTTCTGTCCTCCCGTATTCT
TTCCTGTGTGCTCGCATCTCATTCTCTTTTTTTTCTTCTTCTTTTCTTTC
CTTCTCTCTCCTTTTCCTCTTTTTATCTTTTTCTTTTCTTTATTATTTCT
ATTCTATTATCTTCTTTTTCTATTATTCTTTTCTTGTATCTGTCCTTCTC
ATCTTCTTTATTTATCTTTCCTATTTTTTTTCTCTCCTCCTTCTCCTCCC
TTCTTCTTCACTCACACTTTAGTTATCCTTAAATTTATCTATTTAATTAT
CATCGTCTCATGCACTTACTTACCCCTCCTTATCTTTCCATCTCTTCCTT
ACATCCTCATTCCCCTTACCTTTCTTATTCTTTGTTATTACATCCTTGTC
TCTCTTCTATTACCTCTTTCCCTTATTATTTTCTTCCTTCCGCAGTTGT
NNNNNCCGATGATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGACTTCCCTCACCCCTG
GCCTCACTTCTCTGTATCCAAGCCTCCATGAATCAGGCTAGGCAGGGGCT
CCGCAGAACATCTATAGACAGCTGTTAGTTGTGTGAATTGGAATACATTC
CTTGCTCTCTAGGAGCCAACAATGAGCCCCTGACTGAAGACAAACCCATG
ACTGTCAAATGTCTCCTAAGATTAAGAACTTGACAATTGAGTGCTAGGGG
AGTCTAAGATGAGAAAGGGCTTGCAAGGCAGGAAGAGCAGGCAAAATGTA
CTGTTTTCAGCCACCTGCTCCTCTACCTGTCCATCTGTCAGTCATCCATC
ATCCACTCACCCATCATTCATTGTTATTCAGTCATCATTCATCCATCTGT
AACTCGTCCAACCACTCACTCATTTTCCATACAGCTTTGTTTTATTCTCA
CTACTCAATCATCCCTCATCCACCAACCCACCTATCTATCTACCCATCCA
TTTATCCATCCACATCCATTTATCCACATCCATCCATCTACTCATCCATC
CACTCACATCTACCTACCCATCCATCCATCCATTCATCCATCCATCCATC
ATCCATTCACTCACTAACCCTTCCTTCCTTCATATAATTTTCTCCCTACC
CATCAATCCATCTTATTTCCTCACCTTTTCTTCCCCCCTTTTATCCCTGG
ACCCCCTAATTCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no440_p09.g1 MSMg01no440_p09.g1 CHROMAT_FILE:
MSMg01no440_p09.g1 PHD_FILE: MSMg01no440_p09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:35 2005
         (539 letters)



>mm_chr7_151917929_151918867
          Length = 939

 Score = 1027 bits (531), Expect = 0.0
 Identities = 537/539 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagacttccctcacccctggcctcacttctctgtatccaagcctccatgaatcaggctag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagacttccctcacccctggcctcacttctctgtatccaagcctccatgaatcaggctag 260

                                                                       
Query: 61  gcaggggctccgcagaacatctatagacagctgttagttgtgtgaattggaatacattcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcaggggctccgcagaacatctatagacagctgttagttgtgtgaattggaatacattcc 320

                                                                       
Query: 121 ttgctctctaggagccaacaatgagcccctgactgaagacaaacccatgactgtcaaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgctctctaggagccaacaatgagcccctgactgaagacaaacccatgactgtcaaatg 380

                                                                       
Query: 181 tctcctaagattaagaacttgacaattgagtgctaggggagtctaagatgagaaagggct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctcctaagattaagaacttgacaattgagtgctaggggagtctaagatgagaaagggct 440

                                                                       
Query: 241 tgcaaggcaggaagagcaggcaaaatgtactgttttcagccacctgctcctctacctgtc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgcaaggcaggaagagcaggcaaaatgtactgttttcagccacctgctcctctacctgtc 500

                                                                       
Query: 301 catctgtcagtcatccatcatccactcacccatcattcattgttattcagtcatcattca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 catctgtcagtcatccatcatccactcacccatcattcattgttattcagtcatcattca 560

                                                                       
Query: 361 tccatctgtaactcgtccaaccactcactcattttccatacagctttgttttattctcac 420
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cccatctgtaactcgtccaaccactcactcattttccatacagctttgttttattctcac 620

                                                                       
Query: 421 tactcaatcatccctcatccaccaacccacctatctatctacccatccatttatccatcc 480
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 621 tactcaatcatccctcatccaccaacccacccatctatctacccatccatttatccatcc 680

                                                                      
Query: 481 acatccatttatccacatccatccatctactcatccatccactcacatctacctaccca 539
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acatccatttatccacatccatccatctactcatccatccactcacatctacctaccca 739


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space:   491441
Effective search space used:   491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)