Query= MSMg01no441_b15.b1 MSMg01no441_b15.b1 CHROMAT_FILE:
MSMg01no441_b15.b1 PHD_FILE: MSMg01no441_b15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:46 2005
(284 letters)
>mm_chr7_136797875_136798558
Length = 684
Score = 542 bits (280), Expect = e-158
Identities = 283/284 (99%)
Strand = Plus / Minus
Query: 1 gtgacttcagcttgaatccaggacttgcctttccaggtcatttttaagggaattaagggt 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 484 gtgacttcagcttgaatccaggacttgcttttccaggtcatttttaagggaattaagggt 425
Query: 61 gaatgttcaccaccctctaaggatgtctctctctgctaaggttttacctagaacttgaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 gaatgttcaccaccctctaaggatgtctctctctgctaaggttttacctagaacttgaag 365
Query: 121 actctggcagagcataggaccactgccataatcctctgagacctggggcagagacacaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 actctggcagagcataggaccactgccataatcctctgagacctggggcagagacacaat 305
Query: 181 tagagcagcaggaggtggtggctcgggtgctaaactgcccactccgtccgttcctctaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tagagcagcaggaggtggtggctcgggtgctaaactgcccactccgtccgttcctctaca 245
Query: 241 ggataaacagtacaagggttgaccttcatttggtcttttgtgta 284
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 ggataaacagtacaagggttgaccttcatttggtcttttgtgta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space: 185625
Effective search space used: 185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no441_b15.g1 MSMg01no441_b15.g1 CHROMAT_FILE:
MSMg01no441_b15.g1 PHD_FILE: MSMg01no441_b15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:46 2005
(546 letters)
>mm_chr7_136621520_136622464
Length = 945
Score = 938 bits (485), Expect = 0.0
Identities = 534/557 (95%), Gaps = 12/557 (2%)
Strand = Plus / Plus
Query: 1 tcagatgcttattgcttcagtgctacacactggttaagaacttcaactctggacatagac 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 190 tcagatgcttattgcttcagtgctacacactggttaagaacttcaactctggacataggc 249
Query: 61 agagctgggtttgaatcttaggcctgctcttattctcccaggtaagagatccagctgggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 agagctgggtttgaatcttaggcctgctcttattctcccaggtaagagatccagctgggc 309
Query: 121 tgagcttcagaccccacactgtgagaattagaagccaaaggccatcacttcagagactcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 tgagcttcagaccccacactgtgagaattagaagccaaaggccatcacttcagagactcc 369
Query: 181 tggagagaaggaaatgagttgatgctcctggaatacttggtctgcaagaatggcagctcc 240
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 370 tggagagaaggaaatgagttgattctcctggaatagttggtctgcaagaatggcagctcc 429
Query: 241 cattagctattagccccatctttcctgttaacgcacatcacgt-----------ttcttc 289
||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 430 cattagctattagccccatctttcctgttaacgcacatcacgtgaatagctggtttcttc 489
Query: 290 atcctgaggaggtcccgagagagcccatccctctggcacaaaaagggacagtagaaatgg 349
|||| |||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 490 atcccgaggaggtcctgagagagcccatccctctggcacaaaaagggagagtagaaatgg 549
Query: 350 tggttttccagtttctatgtgtgtttttttgggacactatttgggaaatgttatcatatc 409
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct: 550 tggttttccagtttctatgtgtgtttttt-gggacactatttgggaaatgttattatatc 608
Query: 410 cctgttgcttccaaagcttatggcactgactgctctgaaagacagaataccgttgtcagc 469
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 609 cctgttgcttccaaagcttatggcactgactgctctgaaagacagaatactgttgtcagc 668
Query: 470 agagcacctaatcaatagcattgcagatgtttggacaggatggctcattttgttgttttt 529
||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct: 669 agagcgcctaatcaatagcattgcagatgcttggacagggtggctcattttgttgttttt 728
Query: 530 acagtgacacgcatcca 546
|||||||||||||||||
Sbjct: 729 acagtgacacgcatcca 745
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 945
Length adjustment: 10
Effective length of query: 536
Effective length of database: 935
Effective search space: 501160
Effective search space used: 501160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
