BAC Information

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BAC

Clone NameMSMg01-441C07
Chromosome7 (Build37)
Map Location 66,009,704 - 66,010,043
singlet/doubletsinglet
Overlap geneAtp10a
Upstream geneGabrb3, EG668807, LOC434189
Downstream geneLOC621446, LOC668811, LOC668813, LOC668815, EG668818, Ube3a, LOC100040985, LOC100041010, LOC100041029, LOC100041051, Pwcr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-441C07.T7 (MSMg01no441_c07.b1)MSMg01-441C07.TJ (MSMg01no441_c07.g1)
ACCAG531094AG531095
length758753
length of high quality
(start - end)
160 (81 - 240)340 (76 - 415)
definitionCHROMAT_FILE: MSMg01no441_c07.b1 PHD_FILE: MSMg01no441_c07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:07:49 2005CHROMAT_FILE: MSMg01no441_c07.g1 PHD_FILE: MSMg01no441_c07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:07:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGGGCTCAATXXXXXXXXXXXXXXXXXXXXXXXXXAAATCCGAGAGGAT
CCGCGGAATTCTACCCTTTCCTTTCCTTAATAACAAGTTTCTTCTCCATT
TCTAGCCTCCTCCTGGTCTATCAGGATACCCACCCACCCCCAAACAAGAG
CAGATAGAGGACTTGAGTGTAATTCCTAGCACACACTCATGTACACACAC
ACACATACACACACACACACACACACACACACACACACACACACACTCAC
AAGCTTCTTGCAAACACCAGTATCATTCAGGGGCTGTAACATACTTCAGT
GGCATCTGAAAAACAAGCATTATATTACAAAAACCCAGCAGAACCACAGA
TGGCCTGGCTCTGGTCTTCCTTCTACCTGCCTTTGAGGTCCCTGCCAGGT
GAGGACATCACTGTAGCCACNCCAGTGCAAACCTGACCCTCCCATATTCA
GTCAACTCATACCCTTCCAGGGCAAGCTTTCTTATTTCGTAACACCCTCC
CCCCTCCTCGCAATGAAAGTTGTGGGACCTATGATTGATCCTTCAACATC
AGTGAAGCCAGTGTTCCCCTATATCCTTATAATGTCGCTGTCTCTTCAAT
GCCTGTATCTGCCGCCCACTACCGCCTTTTTTCCCCCATGTATGTTGTTT
TATAATACCCATTGCTTCTCTGCTCTAACTTTCTATTTGTCAGGTAACCC
CACGCGGCTGTATTTTACTAATCTTTTATTGTCCTCACTGTTCTCGCCCT
TTTCTGTG
NTTTCTATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGGCTGCAGGTTTGTGACTAGGATA
CAGCAACACAACTAGAGCTAGTCCTGCAGCATCCGTTCTAAGATAGTTCA
CCCCAGCAAACAGGCTCCTTGTGCTTCAAAGAATACAGTTGCATAGCAAG
AGGTTCTTCCTACATGGATCAATTAATAAACAGCATGAACAAAGCATCCC
TATAGACACTTGTATAGAAAGCTTTTAAAGCGTAGGTTGAAAGAAAGCTT
TTCAAAAGCACTTTGTTTTGTTTTTTATAGTCTGAGAGTGTGTGTTTTAA
ACAAAAGTGTCTTAGTGAATTATGGAAGGAATTGGAAGGCAAGAACAGAG
GGGTGTCTATTTCAGTACCGTCTAGAATATGAGGCAATAAACATGGAACC
CATATCTGTCAACATGACCCTCACTGCATAGATGCTGTCTCGAGTTATGT
ACAGGAGTCCATATACTAGTGGATTACTAATCAAGGGAGTACCCCAGTGT
GATTCATCCATCTCCTGTTCAATAGTTTTTATTGAGCAAGGATCCCCCGT
TCCGGCCAGGTTTTTTTCCATATCTACACTCGCTACCATTTTGTTTTCCC
CCCCACGGATTCTATCCTTTTCCTTGTTACACACAACAAATCTTTCCTTA
TAATCATTGCTTATCCTCCCTCCTTCTCCTTATATCCTTCTTTTTTTTTC
CCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no441_c07.g1 MSMg01no441_c07.g1 CHROMAT_FILE:
MSMg01no441_c07.g1 PHD_FILE: MSMg01no441_c07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:49 2005
         (340 letters)



>mm_chr7_66009504_66010243
          Length = 740

 Score =  596 bits (308), Expect = e-175
 Identities = 332/344 (96%), Gaps = 8/344 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggctgcaggtttgtgactaggatacagcaacacaactagagctagtcctgcagcatccg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 tggctgcaggtttgtgactaggatacagcaacacaactagagctagtcctgcagcatccg 481

                                                                       
Query: 61  ttctaagatagttcaccccagcaaacaggctccttgtgcttcaaagaatacagttgcata 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 ttctaagatcgttcaccccagcaaacaggctccttgtgcttcaaagaatacagttgcata 421

                                                                       
Query: 121 gcaagaggttcttcctacatggatcaattaataaacagcatgaacaaagcatccctatag 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 420 gcacgaggttcttcctacatggatcaattaataaacagcatgaacaaagcatccctaaag 361

                                                                       
Query: 181 acacttgtatagaaagcttttaaagcgtaggttgaaagaaagcttttcaaaagcactttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 acacttgtatagaaagcttttaaagcgtaggttgaaagaaagcttttcaaaagcactttg 301

                                                                       
Query: 241 ttttgttttt----tatagtctgagagtgtgtgttttaaacaaaagtgtcttagtgaatt 296
           |||||    |    ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 ttttg----taaagtatagtctgagagtgtgtgttttaaacaaaagtgtcttagtgaatt 245

                                                       
Query: 297 atggaaggaattggaaggcaagaacagaggggtgtctatttcag 340
           |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 244 atggaaggaattggaaggcaagaacagaggggtggctatttcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 740
Length adjustment: 9
Effective length of query: 331
Effective length of database: 731
Effective search space:   241961
Effective search space used:   241961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)