BAC Information

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BAC

Clone NameMSMg01-441K10
Chromosome7 (Build37)
Map Location 123,092,119 - 123,231,358
singlet/doubletdoublet
Overlap geneSox6, 1110006G14Rik, EG668479, LOC100043313
Upstream geneLOC668472, LOC100042779
Downstream gene1110004F10Rik, Plekha7, Rps13, Pik3c2a, LOC100042798, Nucb2, LOC100043320, EG668484, LOC668485, LOC546993, LOC100043330
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-441K10.T7 (MSMg01no441_k10.b1)MSMg01-441K10.TJ (MSMg01no441_k10.g1)
ACCAG531483AG531484
length743744
length of high quality
(start - end)
573 (73 - 645)338 (327 - 664)
definitionCHROMAT_FILE: MSMg01no441_k10.b1 PHD_FILE: MSMg01no441_k10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:31 2005CHROMAT_FILE: MSMg01no441_k10.g1 PHD_FILE: MSMg01no441_k10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,092,119 - 123,092,691)(123,231,021 - 123,231,358)
sequence
NGCTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCAAGATAGGATCC
GCGGAATTCCACATTCCCTAACTTTCGCATTTAATGTTTTTTAACAATTA
CATGAAGTACTTTTAGCTATTAAAAAAACACTGAATTTTGACTTTCAAAA
GAATTTATAACAAGGCTAACACTGAAGTGTGGTATTAGGAGTGTTTACAT
GTACGCAGGTACACATGTACATGTGCACACATGTATGAAGGCCAGAAGTC
AACTCCATGCGCTATTTCTAGGGAGCTAACCAACCTGTTTTCTGCTAGCA
CAGCAACCTTCCCTAGAAGAGCTTGCTTCTTTAGTGAAATATGAGTTCTA
CTCTTAAAGAGTTCCAAAGACAGTTCTTAATGAAGCCAGGTCACTTAGCT
ACTCATGTATTCTGTTTCTCAGTCTGCATGACCAATATTATTTTAGTGTA
AGGGTCCCACCTCAAAAGAGATATTAGAAAAGCAATCAGAGGAGATGGCT
GAGCAGCACAGAACTACAATGACAATAAGATAGTCTCATAGTCTAAGAAT
ATTGGCTACTCTACTGATAGTCAAACCCCTGGATATCAGGATTTTTCACA
GCCCTTAAAATTTACAAATCCCAAAAACTTAGTGCTATATTTAGAAGTAT
TCATTATGCTAAAAACTGGAACTTGCGTATTTTTAAGTATTGATTTATTT
AATATAGCAACAATAAATCTATTATCCCATAACATAAGAGTTA
CACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTGCCACAAGGAATTCACTATGAGGACCAGGTTGGCCT
CAAACCAGGCTGAGGGACTTCCTCAGAAGGGAGGGACTGAAGAATTGCCT
CTGCCTCCCAAGTGTCAGAATTAAAAACACATGCTTTGAAAATAAGTTAA
AATATTTTAAAATATAAAAATTAAAAGCATGTGTGGTGGCACATACCTTT
AGTCCCATCACTCAGGAGGCTGAGGCAGGAGGCTTATGAGTTGGAGACCA
GTCTGGGCTCACTAGCATTTTTTTTCAAGAAATCATGAAATACATTTATA
ATTTCAATCTTTCAGACTTTGTATTTTGCACACAAGTAATTCTCTTGTAA
GCTAGGCTAACACAGAACATATTGATTGACATTCTTTCTGAAATTTAAGA
GTATAGAGATGAACATGCTTTTGATGGTTTTTATTTCAGTATTTCTGAGG
AGAAAAGACCACAAATGTTTTGCTGTAATAACTTTCCATTTCGAAATGAA
GCATGCTAAACTGACATCCTAAATCCCCAAGCATAGAATTAGAGTATCTT
AGTTTTATAGAAGACACACACTTCATACAGGCTCTTAGAAATTGCCCCTG
AAAGTTTAATGAATCTAATCCTTTATTGCTGTTGCTGCTAAACTGCTGTT
TTGGCTTTTTTGTTTGTTTGCTTGGTCCAAAGACTGGCGAGGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no441_k10.b1 MSMg01no441_k10.b1 CHROMAT_FILE:
MSMg01no441_k10.b1 PHD_FILE: MSMg01no441_k10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:31 2005
         (573 letters)



>mm_chr7_123091919_123092891
          Length = 973

 Score = 1069 bits (553), Expect = 0.0
 Identities = 568/573 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttcgcatttaatgttttttaacaattacatgaagtacttttagctattaaaaaaacact 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 tttcgcatttaatgttttttaacaattgcatgaagtacttttagctattaaaaaaacact 260

                                                                       
Query: 61  gaattttgactttcaaaagaatttataacaaggctaacactgaagtgtggtattaggagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaattttgactttcaaaagaatttataacaaggctaacactgaagtgtggtattaggagt 320

                                                                       
Query: 121 gtttacatgtacgcaggtacacatgtacatgtgcacacatgtatgaaggccagaagtcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtttacatgtacgcaggtacacatgtacatgtgcacacatgtatgaaggccagaagtcaa 380

                                                                       
Query: 181 ctccatgcgctatttctagggagctaaccaacctgttttctgctagcacagcaaccttcc 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 ctccatgcgctatttctagggagctaaccaacctgttttctgctagcacagcaatcttcc 440

                                                                       
Query: 241 ctagaagagcttgcttctttagtgaaatatgagttctactcttaaagagttccaaagaca 300
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctagaagagcttgcctctttagtgaaatatgagttctactcttaaagagttccaaagaca 500

                                                                       
Query: 301 gttcttaatgaagccaggtcacttagctactcatgtattctgtttctcagtctgcatgac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gttcttaatgaagccaggtcacttagctactcatgtattctgtttctcagtctgcatgac 560

                                                                       
Query: 361 caatattattttagtgtaagggtcccacctcaaaagagatattagaaaagcaatcagagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caatattattttagtgtaagggtcccacctcaaaagagatattagaaaagcaatcagagg 620

                                                                       
Query: 421 agatggctgagcagcacagaactacaatgacaataagatagtctcatagtctaagaatat 480
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 621 agatggctgagcagcacagaactacaatgacattaagatagtctcatagtctaagaatat 680

                                                                       
Query: 481 tggctactctactgatagtcaaacccctggatatcaggatttttcacagcccttaaaatt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 681 tggctactctactgatagtcaaacccctggatatcaggatttttcacagtccttaaaatt 740

                                            
Query: 541 tacaaatcccaaaaacttagtgctatatttaga 573
           |||||||||||||||||||||||||||||||||
Sbjct: 741 tacaaatcccaaaaacttagtgctatatttaga 773


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space:   542169
Effective search space used:   542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no441_k10.g1 MSMg01no441_k10.g1 CHROMAT_FILE:
MSMg01no441_k10.g1 PHD_FILE: MSMg01no441_k10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:31 2005
         (338 letters)



>mm_chr7_123230821_123231558
          Length = 738

 Score =  654 bits (338), Expect = 0.0
 Identities = 338/338 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagaaatcatgaaatacatttataatttcaatctttcagactttgtattttgcacacaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 aagaaatcatgaaatacatttataatttcaatctttcagactttgtattttgcacacaag 479

                                                                       
Query: 61  taattctcttgtaagctaggctaacacagaacatattgattgacattctttctgaaattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 taattctcttgtaagctaggctaacacagaacatattgattgacattctttctgaaattt 419

                                                                       
Query: 121 aagagtatagagatgaacatgcttttgatggtttttatttcagtatttctgaggagaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 aagagtatagagatgaacatgcttttgatggtttttatttcagtatttctgaggagaaaa 359

                                                                       
Query: 181 gaccacaaatgttttgctgtaataactttccatttcgaaatgaagcatgctaaactgaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 gaccacaaatgttttgctgtaataactttccatttcgaaatgaagcatgctaaactgaca 299

                                                                       
Query: 241 tcctaaatccccaagcatagaattagagtatcttagttttatagaagacacacacttcat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 tcctaaatccccaagcatagaattagagtatcttagttttatagaagacacacacttcat 239

                                                 
Query: 301 acaggctcttagaaattgcccctgaaagtttaatgaat 338
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 238 acaggctcttagaaattgcccctgaaagtttaatgaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 738
Length adjustment: 9
Effective length of query: 329
Effective length of database: 729
Effective search space:   239841
Effective search space used:   239841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)