BAC Information

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BAC

Clone NameMSMg01-442A24
Chromosome7 (Build37)
Map Location 31,128,462 - 31,128,837
singlet/doubletsinglet
Overlap genenone
Upstream geneSipa1l3, LOC100043791, 4932431P20Rik, 4930432E11Rik, 1700067C01Rik, Zfp84, LOC100043794, Zfp30, EG625349, 6330581L23Rik, BC027344, Zfp420, Zfp27, Zfp74, LOC625437, LOC100043796, Zfp568, Zfp14, LOC100043798, Zfp82, Zfp566, Zfp260, Zfp382, Zfp146, EG330503, Cox7a1, Capns1, Tbcb, Polr2i, Ovol3, Wdr62, EG668354, 1700020L13Rik, Clip3, Alkbh6, AI428936, 0610010E21Rik
Downstream geneLrfn3, Tyrobp, Hcst, AY078069, Aplp1, Kirrel2, Nphs1, LOC100034728, Prodh2, Gm1082, Snx26, BC053749, Hspb6, 1810054G18Rik, Psenen, U2af1l4, Tmem149, Wbp7, Zbtb32, Upk1a, Cox6b1, Etv2, 3100004P22Rik, 2310022K01Rik, 4930479M11Rik, 2200002J24Rik, EG233075, Atp4a, Tmem147, Gapdhs, Sbsn, Dmkn, Krtdap, Ffar2, Ffar3, Ffar1, Cd22, Mag, Hamp2, Usf2-ps1, Hamp1, Usf2, LOC100043823, Lsr, Tmem162, Fxyd5, Fxyd7, Fxyd1, Lgi4, Fxyd3, Hpn, Scn1b, Gramd1a, LOC672598, LOC100043323, LOC100043827, Apbh, Abpe
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-442A24.T7 (MSMg01no442_a24.b1)MSMg01-442A24.TJ (MSMg01no442_a24.g1)
ACCAG531797AG531798
length822811
length of high quality
(start - end)		122 (118 - 239)379 (77 - 455)
definitionCHROMAT_FILE: MSMg01no442_a24.b1 PHD_FILE: MSMg01no442_a24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:04 2005CHROMAT_FILE: MSMg01no442_a24.g1 PHD_FILE: MSMg01no442_a24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTAAACTGCGGCGNAAANGANNNNATTTCCANAGAGCGNGGAANNNANA
ANACTANACTTCACCCGATGCAGGAAGNGCGGAATGGCTTTTATTCGAAG
NTCCAACTTTTTGCCCATCACAGAATTCATCCTGGTGTCAAACCCTATGA
GTGTGGAGAGTGTGGGCAGGCCTTTATCCGTGGCTCTCAGCTCATTGACC
ACTACCGAGNTCATTCCGACTGGAGTCCTTAACATTACTGGTGTGCTTAT
TCAATAGTCTCTATTCAAAGTTGACCTCTGGCCAGGGCTACATTGCCCCC
AGTGTAACTAACGTTTTTTATAACTTTGTTCATCTCGCTTGCTACAGGGT
ATTTTTTTTCTCCCCACCTGGATAAAGACCCATTAACTGGGAAAACCCAC
CCCCCCCGCCCACTGATTATAAAANAAGAGCCACCTCGTGCTTATCATTA
CTTTCGAATTGATCGCACAGACAACTTTTTATAATCCACCTCAACTACTC
CCCGATTTTGTCACCCCCGCACTTAGTGCCCTGGTTGTCTCTTACACTTT
TGAACTCCTCTTCTTGCTTATTTCCCCACGTCATGCCCCACACTACACAC
TTTAAGTCCACCCTCTCACCAACCCTTACTCCTTTCTTTCTATCTTTCTA
CTTTCTCCTCGCTCTCATTCCGTCGGTTTTTCCTCTCCCACCTTTCTCCA
CCTCATCTTACCCTACCCATCATTTCTTATTTTGCTTCCCCATCCTTCAC
TGCTCACATTTCTCTTTCCCCACCCCCTCTCATATTTTATTTCTNCCCTN
CATGCTATTTCTTCTCCCTCTG

NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTGCCTTCCACTACGTAGGTTCCC
TAGGCTCAAACTCAGGAAGCCAGGCTAGGTGGCGTGTGCCTTTCCCCCAT
CCCATAGGCGCTCCCCCAGATTTTTAAATAATTGAATCCAGCTGTCTTCA
CAGCTCAGCAGCTGCCTGCTGCCCTTTTCTCTAGCCAGGCTGTGCTGAGC
ACTGCCGTATTGTTCCTCAGGCCTGGCCTTCTCTTTCTGCTGATGCATAC
AAACCTACTTGATTCACAACTGACAGACCTGCTGACTTCTGAATGCTGAG
GAGCCAATGCCAGGGAGCCTGGGAGCCCAGATATGAAAGCAGGTCAGCGA
TGAATCCAGGTACCAGGATCCAGCTCTGACTGAGGGAAAACTGGACCCTT
CCCAGGAATCCCTTTCTCTCCTGGNAATGGCACTTCAGTCCCCAGGCCCC
TGGAATGTCTATGCATGTTCTGAGGGGCCCCCCCGGTCCCTTGTGAACAC
CCAACCCTTAATTGTGACTCCCTTTCTCATGCCTCTGGTGACTTGGCCGG
CTTTTATAACGGGGCGGTGTTGTCTCTGCTTTCTATTCTATTTTCTTCTC
CTCCTCTTTTTACTTCTCTTTTTACCCCTTCCTCTTTTCCTTTTTTCCCT
CTCTCTTCTTTCTCTCCTTTCTCCTCTCCCATTTTTTCTCCACCTTTCTC
TTTTTTTTTACCCCCCCCTTTTTCCCGCTTACTTTTTCCTCTTTTCTATT
TTTCTCTCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no442_a24.g1 MSMg01no442_a24.g1 CHROMAT_FILE:
MSMg01no442_a24.g1 PHD_FILE: MSMg01no442_a24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:09:04 2005
         (379 letters)



>mm_chr7_31128191_31128969
          Length = 779

 Score =  719 bits (372), Expect = 0.0
 Identities = 375/376 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ccttccactacgtaggttccctaggctcaaactcaggaagccaggctaggtggcgtgtgc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 ccttccactacgtaggttccctaggctcaaactcaggaagccaggctaggtggcgtgtgc 588

                                                                       
Query: 64  ctttcccccatcccataggcgctcccccagatttttaaataattgaatccagctgtcttc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 ctttcccccatcccataggcgctcccccagatttttaaataattgaatccagctgtcttc 528

                                                                       
Query: 124 acagctcagcagctgcctgctgcccttttctctagccaggctgtgctgagcactgccgta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 acagctcagcagctgcctgctgcccttttctctagccaggctgtgctgagcactgccgta 468

                                                                       
Query: 184 ttgttcctcaggcctggccttctctttctgctgatgcatacaaacctacttgattcacaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 467 ttgttcctcaggcctggccttctctttctgctgatgcatacaaacctacttgattcacag 408

                                                                       
Query: 244 ctgacagacctgctgacttctgaatgctgaggagccaatgccagggagcctgggagccca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 ctgacagacctgctgacttctgaatgctgaggagccaatgccagggagcctgggagccca 348

                                                                       
Query: 304 gatatgaaagcaggtcagcgatgaatccaggtaccaggatccagctctgactgagggaaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 gatatgaaagcaggtcagcgatgaatccaggtaccaggatccagctctgactgagggaaa 288

                           
Query: 364 actggacccttcccag 379
           ||||||||||||||||
Sbjct: 287 actggacccttcccag 272


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 779
Length adjustment: 9
Effective length of query: 370
Effective length of database: 770
Effective search space:   284900
Effective search space used:   284900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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