BAC Information

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BAC

Clone NameMSMg01-442K08
Chromosome7 (Build37)
Map Location 143,220,391 - 143,220,734
singlet/doubletsinglet
Overlap genenone
Upstream geneDock1, LOC100043254, Foxi2, Clrn3, Ptpre, Mki67, LOC668764
Downstream geneLOC546009, EG621677, EG668771, Mgmt
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-442K08.T7 (MSMg01no442_k08.b1)MSMg01-442K08.TJ (MSMg01no442_k08.g1)
ACCAG532241AG532242
length788783
length of high quality
(start - end)
---344 (79 - 422)
definitionCHROMAT_FILE: MSMg01no442_k08.b1 PHD_FILE: MSMg01no442_k08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:54 2005CHROMAT_FILE: MSMg01no442_k08.g1 PHD_FILE: MSMg01no442_k08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGAATAGGAGCCGCGG
ACGACTTCCTATCCCCACCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACCTGT
GTTCGATCTGTTTACTATTTTACCTGTGTTACCCCCCTGTATTAAAGCTT
ATCGTTGATATGTTGTCCCACTTGATCAATGATTTTCTTTTCCCTTTATT
CCCTTCCTATTATCGCTGCCTCTCTTACTTCCCTACCCCTCCTCCTCCCT
TCCCCCCTTTTTTTTTTTTTTTTTCTATCTTTGCTTTCTCCTCTCATTTT
TTTCTCTCCTGCTTTTTCTTGACCTTAACACCCTTCATCCTTTTTTTTTT
TCCCTCCCCCTCCGCCCTCCTTCTTCTGCCCTCTTCTCCCCCCTCCTCTT
CTCTTCTTTCCTCCCCTCTTTTTCTTTTCCGCTCCCTG
CCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACTAGGAATGTAGTGGCTAA
GCAGTGTCATAAGCAGAAGGAACTGCAAAGTCCTGTGGCCCTGATTACAC
AGATGGAAGTAAAAACCCCTAACAGAGTGAGTCTGCACATGAAATATTGA
AGCGTAACCCACCCACATTCAGGAAAGTTTAGCTGAGGAGAGAGGACCCA
CCGTGAATGTAGGTGGCAACATCCCATGGGCAGAGGTCCTGGACTGAAGA
GAAAACTAAGAGCAAGCTAAGCCTCTATCAGCAACACCATGCATCTCTTT
CTGCTTCCTGACCACAGACAGGATGTCATCAGCCACCTCATGCTCCTATC
TGCCTGTGGATGAGGATGGAGCTGGACCTTCCAACTGTAAGCCATACAAA
CTGCTCCCTTTCTTAACCCCTTCTTGTTAATACTTGATAACTGTGGGCAA
ACCAACTTCCGAATTTTTTCACCCCTCCCCTTTTTTTCCACTTCCTTTTT
ATTCCCTTTCCCGTGTATTCCCTCCACTTTTTTTCTGTATCTCTTTTTCT
CCCTATGGTTTTTCTCTTCCTCCCTCCCACTTTTATTTTTCCTTCTTGGC
GTTTTTTTCCTTTCTATTCCCCCCCCTTTTTTTCTCTTTTTCCCCCCTCT
CTTCTTTTCCCCCCCCCCCCCCCTTTTTTTTCCTCCCCCATTCCTCTCGC
CTCACTTTGACTTCTTCTCCTTTTTCTCCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no442_k08.g1 MSMg01no442_k08.g1 CHROMAT_FILE:
MSMg01no442_k08.g1 PHD_FILE: MSMg01no442_k08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:09:54 2005
         (344 letters)



>mm_chr7_143220191_143220934
          Length = 744

 Score =  634 bits (328), Expect = 0.0
 Identities = 340/344 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcactaggaatgtagtggctaagcagtgtcataagcagaaggaactgcaaagtcctgtgg 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 201 tcactaggaatgtagtggctaagcagtgtcgtaagcagaaggaactgcaaagtcctgtgg 260

                                                                       
Query: 61  ccctgattacacagatggaagtaaaaacccctaacagagtgagtctgcacatgaaatatt 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 ccctgattacacagatggaagtaaaaacccctaacagagtgagtgtgcacatgaaatatt 320

                                                                       
Query: 121 gaagcgtaacccacccacattcaggaaagtttagctgaggagagaggacccaccgtgaat 180
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaagggtaacccacccacattcaggaaagtttagctgaggagagaggacccaccgtgaat 380

                                                                       
Query: 181 gtaggtggcaacatcccatgggcagaggtcctggactgaagagaaaactaagagcaagct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtaggtggcaacatcccatgggcagaggtcctggactgaagagaaaactaagagcaagct 440

                                                                       
Query: 241 aagcctctatcagcaacaccatgcatctctttctgcttcctgaccacagacaggatgtca 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagcctcaatcagcaacaccatgcatctctttctgcttcctgaccacagacaggatgtca 500

                                                       
Query: 301 tcagccacctcatgctcctatctgcctgtggatgaggatggagc 344
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcagccacctcatgctcctatctgcctgtggatgaggatggagc 544


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space:   246225
Effective search space used:   246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)