BAC Information

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BAC

Clone NameMSMg01-442O20
Chromosome7 (Build37)
Map Location 62,529,717 - 62,529,995
singlet/doubletsinglet
Overlap genenone
Upstream geneMrps33p, LOC622146, Luzp2
Downstream geneLOC668796, Siglech, Tubgcp5, Cyfip1, Nipa2, Nipa1, LOC672959, Herc2, p
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-442O20.T7 (MSMg01no442_o20.b1)MSMg01-442O20.TJ (MSMg01no442_o20.g1)
ACCAG532455AG532456
length805798
length of high quality
(start - end)		399 (47 - 445)266 (76 - 341)
definitionCHROMAT_FILE: MSMg01no442_o20.b1 PHD_FILE: MSMg01no442_o20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:20 2005CHROMAT_FILE: MSMg01no442_o20.g1 PHD_FILE: MSMg01no442_o20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTGTTTATCTCTGTACCCCATATTTCAATGTTGTGATTTGAAT
ATCTGGAGTCCAGCTTCTTGATCTCTTTGTATATATTGGATATTAGTCCC
CTATTAGATTTAGGATTGGTAAAAATCCTTTCCCAATCTGTTGGTGGCCT
TTTAGTCTTATTGACAGTGAGTTTTGCCTTACAGAAGCTTTGCAATTTTA
TGAGGTCCCATTTGTCAATTCTTTTATTTTTCTTTTTTTTCTTTCTTTTT
TTAAATTAGGTATTTTCCTCATTTACATTTCCAATGATATCCAAAAAGTC
CCCAATACACTCCCCCCCCAATCCCCTACCCACCCACTCCCACTTTTTGG
TCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGAAAATCCAATGTG
CGTCTCTTTCCAGTGATGGTCGACTAGGTCATCTTTTGGTATATATGCCG
CTAGAGGCAAGAGCTCTGGGGGACTGGTTTAGTCCTAATGGTGGTCCCCC
CTTAAGGGGGGAAAAACTCCTTTTCTTCTTCCGGATTTTTTCACGCTCTC
CCTTGGTGGGCCCGGGCTCTTTCCCTTAACTGCAGCGGACATTTTTTTCT
TTTTTTTTTCACGCCTTGCGCCTCCCTTCTTTTTCACAAACCTTTTTGTT
CCTCCTTTTCTCATTTTTTTCTTTTTTTTTTTTGCTCTATCCCTCTTTTT
TTTCTTTTTTCCTCCCCTTCTTTCTTTTTTCTCCCTCTTTTTCTTTTTTC
CTCTG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTCCCACATGAGTAAAATAT
CCTCCTGCCTGTTTCTTTGCAGAAAATACTGAAATGATTTGTCCCAAGTT
ATTTTGACACTAAGATGACTAAAGAGTTGAATGAGGACCAGGGAATAAAG
AATATATTTTAAGTTTAATGTGGTAATCCATCAAATATATCCTGCTGGAG
TGTTATTGCCTTAAGAAGTAATTATCACATACACACACACACTATATATA
TATATATATATATATATATATATATATATATATATATCGCCTACTTTGGC
GAGAATGTGTGCAATTCATGCATCTCCTGATTCTCTTCTGTGAATGGCCC
AGTTTGCTCACACTCCACGTAAGTTTGATATTGTGCTGGCGAGAGATGTT
TTTTTATCATTCTACTCGTCTCGCCCCCTATTGTTCTCCATTTTCTTCGT
TTTTTTTTTTTTCACCATTCCCCTGTGTGGTTTCCCCCCCCCCCTTTTTA
TATACACTCCTCTCCGCGCTCCTTTTTTTCTTTTCCCCCCACTTCGTTTC
CTCCCTCTCCTCCCTCTTCTTTCCTTTTTTCCTTTCCCCCTTCTTCTTTT
TCTTTTCTTCTTTTCCTTTCTCTTTTATTTTTTTCCCCCTCTCCTTTTCT
TCTTTCCGCCTTTTTCCCTTTTCTCCCTCCTCCCCTCCTCTTTTTTCTCC
CCCCCTTTCCCCCTCCCCCCCTTTCCATTCTCTTTTTTCTCTCTTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no442_o20.g1 MSMg01no442_o20.g1 CHROMAT_FILE:
MSMg01no442_o20.g1 PHD_FILE: MSMg01no442_o20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:10:20 2005
         (266 letters)



>mm_chr7_62529517_62530184
          Length = 668

 Score =  462 bits (239), Expect = e-135
 Identities = 262/279 (93%), Gaps = 16/279 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgtttcccacatgagtaaaatatcctcctgcctgtttctttgcagaaaatactgaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgtttcccacatgagtaaaatatcctcctgcctgtttctttgcagaaaatactgaaat 260

                                                                       
Query: 61  gatttgtcccaagttattttgacactaagatgactaaagagttgaatgaggaccagggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatttgtcccaagttattttgacactaagatgactaaagagttgaatgaggaccagggaa 320

                                                                       
Query: 121 taaagaatatattttaagtttaatgtggtaatccatcaaatatatcctgctggagtgtta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaagaatatattttaagtttaatgtggtaatccatcaaatatatcctgctggagtgtta 380

                                                                       
Query: 181 ttgccttaagaagtaattatcaca--tacacacacacact--------------atatat 224
           ||||||||||||||||||||||||  |||||||||||||               ||||||
Sbjct: 381 ttgccttaagaagtaattatcacacatacacacacacacacacacacacacacgatatat 440

                                                  
Query: 225 atatatatatatatatatatatatatatatatatatatc 263
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atatatatatatatatatatatatatatatatatatatc 479



 Score = 89.7 bits (46), Expect = 2e-22
 Identities = 46/46 (100%)
 Strand = Plus / Minus

                                                         
Query: 219 atatatatatatatatatatatatatatatatatatatatatatcg 264
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 atatatatatatatatatatatatatatatatatatatatatatcg 433



 Score = 83.9 bits (43), Expect = 1e-20
 Identities = 43/43 (100%)
 Strand = Plus / Minus

                                                      
Query: 218 tatatatatatatatatatatatatatatatatatatatatat 260
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 tatatatatatatatatatatatatatatatatatatatatat 435


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 88
Number of extensions: 35
Number of successful extensions: 35
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 7
Length of query: 266
Length of database: 668
Length adjustment: 9
Effective length of query: 257
Effective length of database: 659
Effective search space:   169363
Effective search space used:   169363
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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