BAC Information

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BAC

Clone NameMSMg01-442P18
Chromosome7 (Build37)
Map Location 149,632,104 - 149,632,219
singlet/doubletsinglet
Overlap genenone
Upstream geneRplp2, Pnpla2, Efcab4a, Cd151, Polr2l, Tspan4, Chid1, Ap2a2, Muc6, LOC100039649, Muc2, Muc5ac, Muc5b, Tollip, EG623757, Brsk2, 2700078K21Rik, Dusp8, LOC100039728, EG668763, LOC100043616, EG665295, LOC100043617, Krtap5-2, LOC100039757, LOC100039767, EG665305, Krtap5-5, EG640223, LOC672428, LOC100039800, LOC100043627, LOC100043629, ENSMUSG00000038442, Krtap5-1, Krtap5-4, LOC270015, 6330512M04Rik, Ctsd, Syt8, Tnni2
Downstream geneLsp1, ENSMUSG00000043795, Tnnt3, Mrpl23, Nctc1, H19, Igf2, Igf2as, Ins2, EG640264, EG624121, Th, Ascl2, Tspan32, R74862, Cd81, Tssc4, Trpm5, Kcnq1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-442P18.T7 (MSMg01no442_p18.b1)MSMg01-442P18.TJ (MSMg01no442_p18.g1)
ACCAG532499AG532500
length824782
length of high quality
(start - end)
116 (70 - 185)401 (75 - 475)
definitionCHROMAT_FILE: MSMg01no442_p18.b1 PHD_FILE: MSMg01no442_p18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:25 2005CHROMAT_FILE: MSMg01no442_p18.g1 PHD_FILE: MSMg01no442_p18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTATATTTGCGGACGCAAACGACTCCTAATTCCTACCACCGCGGAATCT
ATCTCCTCCAGAAACCCTTGTGAAGGGCTCTTCTCTTTGCCCACTGTCCC
CACCCACCCCAGGCAAACAATCTGGAGTTTTGTATTTGGCAACTTCTTGG
CTTTTGTGTTTTGTTGTTTTTGTTTGTTTGTTTGTTCTGCCCCCCTACAC
ACTTCCCCCCCACACTCTACTCCCCACCCCCTCGACCAGAGGAGTTTTTT
TTTCCCCCAGCACCACTTTTTTCCCCCCCCTCTCCTTTCTTCCTTATGTC
CCCTCACGCGCGCTTTCGTGCTTTTGCCTCCCAACTAAAATCCCCCTTAT
CCCCTTTTTTTTTTCTCTCTCCCCCCTTTTATCTTTATTTTTCCTCTCAC
ATTTACCTCCTCTCCCTCCCTCCTTATTTTCACATCTTTTCCTTTCCCTT
TCTCCCCCTTCCTTTCTTTTTCCTTTTTCCCTCCCTCCTTTTTCCCCCCC
CTTTTTTTTCTTCCCTCCTTCTTCATTCCCTCCCCCCTCCCTCTTTCATC
CTACCCCAACCCCCACCCCCCCTTTTTTCCCCTCTTTTCTCTCTCCTCCA
CTCCCCTCCCCCTCTTTATCTTCTCCCCTTTATACCCTCCCCCTTTTCTT
TTCCCCTTTCTATTCTCTCTTCCTCGCCTCCCATCCTCCCCCCCCCTCTC
TTTCTTTCCCTTCTTCCTTCCTCCTCCTCCTATCATCTCAACGCTAATCT
CCACTTTTTTCCACCCTCTCACTATTCATCCCTCTTCTTCTTCATTTCTC
TCTCACTTTGTCTCTTTCCCTCTN
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCGCAGACTACGTTTTAAGCTCTTAAA
AGAGCTTAACTCTGCGGTTAGAACTTATGGCCCCTCTGCCCCCTACACGC
TTTCGCTCCTAGAAGCTCTTCCGGGAGGCGAACATATGCTCCCTAGTGAG
TGGATCAAAGTAATCCAAACTGTGTTAACACGCGGGCAATTTCTCTCATG
GAAAGCCGATTTCCTCGATCGGTGCCAGACAATTGCAGTGGCTAATCAGA
AAAATCCTCGGGCGCCACCTGCTGTTTGGACCTTTGAAAAGCTTTCTGGT
CAAGGTAAATACGCGACAGAAGCCAGGCAAAAACACTTCTCTGTGGGTCT
TTTGGCTCAGACTGCTAATGCAGCCCTGGGAGCTTGGCGCGGTATTCCTA
TGAAAGGTTCAGTTATTACGCCTCTAACCAAAGTCATTCAAGGAGCCCAG
GAAGACTATAGTGATTTTGTGAGTCGTTTGCTTGACACTGTAGAAAGTGA
CCTGTCTCTGGTGACTGTAATTTGTTCACCTATTGTTTATTGACATTGCC
TTTTCCCCTGTTTCCCTTCCTTGTTCTTACATTCTTCCTAGGGTTTTTTC
CCACCGCCTTTCTTTTTTTTCTTTTTTACTACTCCCACCGCCCTTTACTT
TTCCTATTTTGTTCTTTATTTTCCCGCCGCCCACTCTCCCCCTTTGTTTC
TGTTTTCCCCCCCTCTCTCCCATTCCTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no442_p18.b1 MSMg01no442_p18.b1 CHROMAT_FILE:
MSMg01no442_p18.b1 PHD_FILE: MSMg01no442_p18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:10:25 2005
         (116 letters)



>mm_chr7_149631904_149632419
          Length = 516

 Score =  224 bits (116), Expect = 1e-63
 Identities = 116/116 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtgaagggctcttctctttgcccactgtccccacccaccccaggcaaacaatctggagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gtgaagggctcttctctttgcccactgtccccacccaccccaggcaaacaatctggagtt 257

                                                                   
Query: 61  ttgtatttggcaacttcttggcttttgtgttttgttgtttttgtttgtttgtttgt 116
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 ttgtatttggcaacttcttggcttttgtgttttgttgtttttgtttgtttgtttgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 116
Length of database: 516
Length adjustment: 8
Effective length of query: 108
Effective length of database: 508
Effective search space:    54864
Effective search space used:    54864
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)