BAC Information

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BAC

Clone NameMSMg01-443F16
Chromosome7 (Build37)
Map Location 135,005,610 - 135,005,921
singlet/doubletsinglet
Overlap genenone
Upstream geneHirip3, 1110032O16Rik, Kctd13, A830007L07Rik, Sez6l2, D830044I16Rik, Cdipt, Mvp, 2900092E17Rik, Maz, Kif22, 1810010M01Rik, AI467606, Qprt, Spn, Cd2bp2, Tbc1d10b, Mylpf, Sept1, LOC100043580, Zfp553, Zfp771, 2410015N17Rik, Sephs2, Itgal, Zfp768, LOC100043097, LOC100043589, 6430604K15Rik, 9130019O22Rik, E430018J23Rik, LOC100043590, Zfp764, Zfp688, Zfp689, Prr14, Fbs1, 1700008J07Rik, LOC100043597, D030022P06Rik, Phkg2, Gm166, Rnf40, 1700120K04Rik, Zfp629, Bcl7c, Ctf1, Ctf2, Fbxl19, Tmem142c, Setd1a, Hsd3b7, Stx1b2, Stx4a
Downstream geneZfp668, Zfp646, BC039632, Vkorc1, Bckdk, Myst1, Prss8, Prss36, Fus, Pycard, Trim72, LOC436010, EG668675, Itgam, Itgax, Itgad, Cox6a2, LOC100043133, Armc5, Tgfb1i1, Slc5a2, BC017158, EG628781, Rgs10, LOC100043643, Tial1, Bag3, EG639030, Inpp5f, LOC100043651, 1110007A13Rik, Sec23ip
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443F16.T7 (MSMg01no443_f16.b1)MSMg01-443F16.TJ (MSMg01no443_f16.g1)
ACCAG532780AG532781
length741742
length of high quality
(start - end)		416 (76 - 491)312 (80 - 391)
definitionCHROMAT_FILE: MSMg01no443_f16.b1 PHD_FILE: MSMg01no443_f16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:56 2005CHROMAT_FILE: MSMg01no443_f16.g1 PHD_FILE: MSMg01no443_f16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCGGTCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCTTGGATTACGCAAGACAGGCAGCTGTGCAGTGCCCTATG
TGGGTGCTAGGAAGCAAACTCAGACTCTCTGGCAGAACAATACTCTTAAC
CACTGAGCTAATGCTCCAGCTCACAAAATATTTAAAAACGAAGCAAAACA
AAAATGTAGAGATGACTCAGCAGTTTAGAGCACTGGCTGCTCTTGCAGAG
TCCCATGAATTAAACTCACATCACCCAGATGGTGGCTCTCAGCTGTCTGT
AACTCTAGCTCCAAGGGCTCCCTTCTTTTCTTCTGGCTTCTGTGCACACG
AGGAATGGTGCATATATTATATATTCAGATAAAACATTCATATACATAAA
AATTTTTAAAGCGTATAAAGTAGGCTAGGTGTGGTGACACACAGTTTTAA
TCACCGCACTCTAAAAGGCAGAGGTAGACAGTCCTCTGCCAGTTCCAGGC
CAGTCAAGACCTCAGAGTGACATTCTGTCTCAAGACAACAACCAACGCTG
GGCGTGGCGGGGCACGCCTTTAATTCCCGCACTCTGGAGGAAGAGACAGA
CAGGCAAATTTCTTGAGTTCGAGGCCAGTCCTGGCCCACAAAACGCGGCT
TCCGTATTATTTCAGGCTACCCCATAAAACCCCGGCCTTCCAAAAAAACC
ACCCCTTCACCTATATACTCTACCCTTTTACGCTTTCCCGG

TTTTTACGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACCAGGATCCAGGTCACCTCC
AGGCTCATGTGCTCATCATGAGGACATTGCAGCAAGCAGCCATGATTCAG
GAATGGCAAACCAGGTCCTCAGCACCAGGAGAAATAGCAAGACATCTCAG
TGGCAGCGATAGCAGTCATGTCCTGGTGCTCACACATGAGTGTTTAGAGG
GAAGTCTTTGGCTTGGTGAGATGCCCAACCAGTAAAATGTATTTGCCACC
AAGCTCAACAACTCAAGTTTGGTGGCCTAGACCCGGGTGATGGGTGATGG
GAGGAGAGAACTGATTCTTTTGTTTTGTTTGTTTTTGTTTGCTTGCCTGG
CCGCNTCNTCNNAACCCCTTTTCCTTGCGTCTTTTCTGGTGTTTCGCCCT
CCCCCTCCGTTCCTTTTTTCCCCTCCCCCTTTTTTCCTCTTGCCNTGTCC
TTTCCGCTTTGTCCTCCCCCCCCCCTTTTTTCCTCCCTCCCCTTTTCCTC
CGCCCCCCGCCCCCCTTTTTTTTTCCCCTTCCCCCTTCTTTTTCTTCTTT
TCCCTCTTCCCCCCCCCTCCTTCTTCCTTCCCCCCTCTCTTTTCCCCCCC
TTTTTTTTTCCCTTCTTCCCTTTCCTCCCCCCCTTTCCCGCGGCTCCTTT
CTCCTTTTTTTTCCCCCCCTTTTTCCCCCCTTTATTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_f16.g1 MSMg01no443_f16.g1 CHROMAT_FILE:
MSMg01no443_f16.g1 PHD_FILE: MSMg01no443_f16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:10:56 2005
         (312 letters)



>mm_chr7_135005537_135006248
          Length = 712

 Score =  565 bits (292), Expect = e-165
 Identities = 307/312 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   accaggatccaggtcacctccaggctcatgtgctcatcatgaggacattgcagcaagcag 60
           |||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 385 accagggtccaggtcacctccaggctcacgtgctcgtcatgaggacattgcagcaagcag 326

                                                                       
Query: 61  ccatgattcaggaatggcaaaccaggtcctcagcaccaggagaaatagcaagacatctca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccatgattcaggaatggcaaaccaggtcctcagcaccaggagaaatagcaagacatctca 266

                                                                       
Query: 121 gtggcagcgatagcagtcatgtcctggtgctcacacatgagtgtttagagggaagtcttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtggcagcgatagcagtcatgtcctggtgctcacacatgagtgtttagagggaagtcttt 206

                                                                       
Query: 181 ggcttggtgagatgcccaaccagtaaaatgtatttgccaccaagctcaacaactcaagtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggcttggtgagatgcccaaccagtaaaatgtatttgccaccaagctcaacaactcaagtt 146

                                                                       
Query: 241 tggtggcctagacccgggtgatgggtgatgggaggagagaactgattcttttgttttgtt 300
           |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 tggtggccaagacccgtgtgatgggtgatgggaggagagaactgattcttttgttttgtt 86

                       
Query: 301 tgtttttgtttg 312
           ||||||||||||
Sbjct: 85  tgtttttgtttg 74


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space:   213009
Effective search space used:   213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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