BAC Information

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BAC

Clone NameMSMg01-443I24
Chromosome7 (Build37)
Map Location 119,220,789 - 119,352,801
singlet/doubletdoublet
Overlap geneUsp47, Dkk3
Upstream geneEif4g2, LOC100043221, LOC100042658, LOC384658, Galntl4, LOC668399, LOC100042678
Downstream geneMical2, Micalcl, Parva, LOC627808, Tead1, 4632411J06Rik, LOC434227, Arntl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443I24.T7 (MSMg01no443_i24.b1)MSMg01-443I24.TJ (MSMg01no443_i24.g1)
ACCAG532939AG532940
length743749
length of high quality
(start - end)
244 (81 - 324)193 (127 - 319)
definitionCHROMAT_FILE: MSMg01no443_i24.b1 PHD_FILE: MSMg01no443_i24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:12 2005CHROMAT_FILE: MSMg01no443_i24.g1 PHD_FILE: MSMg01no443_i24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,220,789 - 119,221,032)(119,352,609 - 119,352,801)
sequence
AAATTAGTCCTCATGTCACTATACGACNCACTATAGGTACGAAAAACGCG
GAATTCTTCAGCTTATGACTCAAAGAGCTGTGAGTTGAAAGCAGTCAGGC
ATAAAAGTGTGATATCCCTGCTCTGACTACAGCAGACTCCAAAGTTCTCA
GGGACAATGGATGACTTAGTTCTTCTTTTGTAACCCTTTGCACAGTAATC
AAGAGAATGTTTTGTTGGGATTGGGAATAAATGATTCTGTTTGGGGCTTA
GCATAGTTTCTGTCTTAAATGTTGCAGATGGACTGTCTTAAATGTTGCTG
AGGAAAATATTAATTTTTCTATTGTTATTTTATAGCAGCAATCATAAATG
GGGTTTAATATAATTGAGAATTACTATCTGCAGTATTAAAATTTTATGAA
CTGTAGAAATAGTTTTAGAGCGTAATTTTTTAGTTGTTAAACTTAAGGTC
TGAACTTAAAAGAAAACAAATTTACTTAAAATAAATGCTTCTCTTAATCA
GAACGTGGTAAACTGTGAGAACATGGCACAAAAAATAAACAGGAATATCT
TTTCCTTTATTTGGCTTAAGATGTTAAGATAACTTTGGCTTAAAAGAAAT
CTCCTCACACTGAAAGTTGCACTGATAGTGGATCAGAAAATGAACGCCGC
TGCCACCACTTTCTTTTTATTATTGATTTCCCCCCGCATGAAAGTGGTTG
TGAAAGTTACTTGCTCCGCCAATATTTACCTTTACTTGTTACN
NAAGATGCAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCTGCCAACATCAGTGAGGCCTGATAGGTACCTGGGAGA
ATCCCGAGACCAATGATTTTGCCCGTCTCTAAGCTTTGTGGTGGGAACAG
AAAACACAGCAATCCTGTGACCTCCTGTCAGCTTGGCAGAGGGCCTGGGT
TCAAGACCAGAGGAAAAACTAGAGCTAAAGGGTGGGGGTTGGTAAACATA
CATAAATCCGCACTCTGTCCCAGGATTCCTGCAGGCAGGCGGCACTTGGG
GTGATTTATTCTGCTTAAGTTTTTTTTTGCGNGCCTGTGCCAGGGTGCAC
ACAATACCCTTCACCTTGACGAATTTGCAGCCTCGTTCAAAGGTCGTGTT
TGCTCAGTGTATGTATGAGATAGTTAGGGGAGCCTGTGCCCAGCGTAGAT
CTGTTTGTGGTGAGGCCCCTGTCACCAGGGACTGTCATTCCCGACCTTGG
ATCGTCACGTAAGCTGCTTTGCTACCCACCATATGCCGCGTGTTCTCTCT
ACCCGCCTTTTTTCTTCTTCCCCTTTTATCACAGTTCCAGCCCTCTTGCC
TTACCCCCCACATGCTCTCGTTTTTTTTCACCCCCCCCCTTGGTTTTTAT
TCTAGTCCCTCCCTTTTTCCCTCCTCCCAGTTGCCTTCCCCCTCTTTATC
TTTTCTTCTCACTCCATCCCCCCCCTTTCCTTTCTTCCCCTTTCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_i24.b1 MSMg01no443_i24.b1 CHROMAT_FILE:
MSMg01no443_i24.b1 PHD_FILE: MSMg01no443_i24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:12 2005
         (244 letters)



>mm_chr7_119220589_119221232
          Length = 644

 Score =  449 bits (232), Expect = e-131
 Identities = 241/244 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgagttgaaagcagtcaggcataaaagtgtgatatccctgctctgactacagcagactcc 60
           ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 201 tgagttgaaagcagtcaggcataaaagtgtgatatccctgcactgagtacagcagactcc 260

                                                                       
Query: 61  aaagttctcagggacaatggatgacttagttcttcttttgtaaccctttgcacagtaatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaagttctcagggacaatggatgacttagttcttcttttgtaaccctttgcacagtaatc 320

                                                                       
Query: 121 aagagaatgttttgttgggattgggaataaatgattctgtttggggcttagcatagtttc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 aagagaatgttttgttgggattgggaataaatgattctgtttggggcttagcatagttgc 380

                                                                       
Query: 181 tgtcttaaatgttgcagatggactgtcttaaatgttgctgaggaaaatattaatttttct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtcttaaatgttgcagatggactgtcttaaatgttgctgaggaaaatattaatttttct 440

               
Query: 241 attg 244
           ||||
Sbjct: 441 attg 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no443_i24.g1 MSMg01no443_i24.g1 CHROMAT_FILE:
MSMg01no443_i24.g1 PHD_FILE: MSMg01no443_i24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:12 2005
         (193 letters)



>mm_chr7_119352409_119353001
          Length = 593

 Score =  350 bits (181), Expect = e-101
 Identities = 190/193 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctctaagctttgtggtgggaacagaaaacacagcaatcctgtgacctcctgtcagcttgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ctctaagctttgtggtgggaacagaaaacacagcaatcctgtgacctcctgtcagcttgg 334

                                                                       
Query: 61  cagagggcctgggttcaagaccagaggaaaaactagagctaaagggtgggggttggtaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 cagagggcctgggttcaagaccagaggaaaaactagagctaaagggtgggggttggtaaa 274

                                                                       
Query: 121 catacataaatccgcactctgtcccaggattcctgcaggcaggcggcacttggggtgatt 180
           ||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct: 273 catacataaatccacactctgtcccaggattcctgcaggtaggcagcacttggggtgatt 214

                        
Query: 181 tattctgcttaag 193
           |||||||||||||
Sbjct: 213 tattctgcttaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 193
Length of database: 593
Length adjustment: 8
Effective length of query: 185
Effective length of database: 585
Effective search space:   108225
Effective search space used:   108225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)