BAC Information

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BAC

Clone NameMSMg01-443L02
Chromosome7 (Build37)
Map Location 28,113,680 - 28,113,901
singlet/doubletsinglet
Overlap geneLtbp4
Upstream geneNlrp9c, LOC100043195, Nlrp4a, Nlrp9a, V1re12, EG243881, LOC623830, Cyp2b19, Cyp2g1, LOC100043745, Cyp2a5, EG233005, EG330491, Cyp2a12, LOC100043199, Cyp2f2, Gm1450, Egln2, Rab4b, Mia1, Snrpa, Itpkc, Adck4, Numbl
Downstream geneShkbp1, Spnb4, Blvrb, EG668045, Sertad3, Sertad1, Prx, Hipk4, Pld3, 2310022A10Rik, Akt2, Ttc9b, Map3k10, C030039L03Rik, Zfp60, LOC100043229, LOC100043233, 4933426I21Rik, Zfp59, 4732475C15Rik, Prkcz2, 1700049G17Rik, EG668175, LOC100043771, Zfp780b, C130069I09Rik, LOC100043772, Psmc4, LOC100043774, 9530053A07Rik, Fbl, Dyrk1b, Eid2, LOC434156, BC089491, Dll3, Timm50, Supt5h
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443L02.T7 (MSMg01no443_l02.b1)MSMg01-443L02.TJ (MSMg01no443_l02.g1)
ACCAG533038AG533039
length742767
length of high quality
(start - end)
49 (269 - 317)222 (84 - 305)
definitionCHROMAT_FILE: MSMg01no443_l02.b1 PHD_FILE: MSMg01no443_l02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:22 2005CHROMAT_FILE: MSMg01no443_l02.g1 PHD_FILE: MSMg01no443_l02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCGCTCCTCAAAATTGCGGCGCTAAANGANNANTATAGTCCGAGCTGGGC
GGNAANCANCTGCAATAACAAAAAGATGGTGTGNAGCTTTGAGCCCATTG
TTTGGGAGGCAGAGGCAGGTATGACCCGCCATGAGTTTGAAGCCTGCCTC
GTCTACATAGTAAGTTCAAGGTCTGTCAGGGATACATTGTGAAACCATGG
AGGGAGATATACATATTATAACAAAACCAATCTTGACTGTGCCTATGAGG
ATTTGTGCTTTCCCACCTCTACCTCCTTGGTGTCCTTTTCTCCCTCTTTG
CTCCCCATCATTTGTGCTTCTTTTTTTTTTTATCTCCCCTGCGTGCTGCC
AGAATACTTAGACATGTTCCTACCCCGGCCCTCTGTGTTGCCTCCTCCTT
CATCCCGTAAACTCCTTTCTTCTCCATGGCCTTTTTTTCTTCTCAAGACC
GCCTGAAGTGTGATCTCCCTGCCTACCACTTCTCATGTCCGAATAGTTCC
CATTCTCTCTCCCCAGTCTTCTCTGGTACCACCTTTTTCCCCTTTTTTCC
CCCCCTTTTCCTCTTATCCTTTCCTCCTTTTTTTACGCCATAGCTTTTTT
TTATTCTCAATCTCACGCCTTCCCAACCCATTTTTCTCCCTTCCCCCCCC
TTTCCCTCTATCCATTTTTTCACCAACCCCATTCTTTCTCACCCCTCCCC
GTTCCCTTATAATATTATTATACCTCTTTCCTCCCCCCCCCN
TTTTCTCGATGCTATGGTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAAATATTCTGGGATGTTTT
CTAAGGTCATGAGCAATTTAGGAGCCAGCTTCACAGCCCCGCCCCCTTTC
CTGGTGGCTCACAGATGCAGCTGCTGCGGGAAGAGTCCAGGAGGAAACCG
TCCGGACATACACACGTGTAGCCGCCACGAGTGTTGGCACACTCCCCGTG
TTGGCAACGCCCACCGGTGGCGCACTCATCCACATCTGCAAGAGTTGAGG
AAGTTTTTGGCGAGTCTGGGACTACTATTCTCCTGGCAGCCCAACCTTGA
AAGACTAGCCCTCGGTTCCCTGCCCCCTGTAGGGCCTTACCTACACAGGA
CCCATTAACTCTCTCGAAGCCGCGCGCACTAGGTTCATTTGGCCCCACTC
TCTTGTTTGTAGCTCCCTGCCGATATTGCGACAAACGCTAGCGCTCCACC
ATTGTCCCCACCCCCCCCTATTTTTTCTCCTTCCCATTTCCCTCCCCCCC
CCTCCCCCCCTTATTTCTTCTCTTACACCCTCTTTTTTTTCATCTTTTCC
ACCGCCATCCCCCCCCCCCCTTCTTCTCTTCCCCCCTTTACTTTTCCGCC
ACGCTTTTTTTTTCCAATATTCCCCTTTTTCAACTCGCCCCTTTTTCACG
CCCTTTCTTTTCTCTTCTTTTTTTTATTCCCCCCCCTTTTTTTCGCGCCC
TTTATATTTATCATCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_l02.g1 MSMg01no443_l02.g1 CHROMAT_FILE:
MSMg01no443_l02.g1 PHD_FILE: MSMg01no443_l02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:22 2005
         (222 letters)



>mm_chr7_28113480_28114101
          Length = 622

 Score =  422 bits (218), Expect = e-122
 Identities = 221/222 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atattctgggatgttttctaaggtcatgagcaatttaggagccagcttcacagccccgcc 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 atattctgggatgttttctaaggtcatgagcaatttaggaaccagcttcacagccccgcc 260

                                                                       
Query: 61  ccctttcctggtggctcacagatgcagctgctgcgggaagagtccaggaggaaaccgtcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccctttcctggtggctcacagatgcagctgctgcgggaagagtccaggaggaaaccgtcc 320

                                                                       
Query: 121 ggacatacacacgtgtagccgccacgagtgttggcacactccccgtgttggcaacgccca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggacatacacacgtgtagccgccacgagtgttggcacactccccgtgttggcaacgccca 380

                                                     
Query: 181 ccggtggcgcactcatccacatctgcaagagttgaggaagtt 222
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccggtggcgcactcatccacatctgcaagagttgaggaagtt 422


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 222
Length of database: 622
Length adjustment: 9
Effective length of query: 213
Effective length of database: 613
Effective search space:   130569
Effective search space used:   130569
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)