BAC Information

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BAC

Clone NameMSMg01-443N07
Chromosome7 (Build37)
Map Location 49,334,612 - 49,334,984
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668555, EG627987, LOC100039269, LOC545955, EG628304, LOC668561, EG434172, LOC100039221, LOC668565, AI987944, EG269902, LOC100039375, EG628359, 2610021A01Rik, 2810426N06Rik, LOC668576, Gprc2a-rs5, LOC628372, EG668579, EG628403, EG628422, Gprc2a-rs1, EG628444, EG434174, EG637913
Downstream geneEG434175, LOC100039556, EG637898, Gprc2a-rs2, LOC434177, Vmn2r-ps60, 4933421I07Rik, LOC628503, BC063263, LOC100039449, EG637776, C330019L16Rik, EG434179, EG546965, LOC546964, LOC100039706, EG637572, LOC100039507, EG435975, LOC668606, EG668668, LOC100039543, LOC668612
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443N07.T7 (MSMg01no443_n07.b1)MSMg01-443N07.TJ (MSMg01no443_n07.g1)
ACCAG533143AG533144
length902757
length of high quality
(start - end)
---371 (79 - 449)
definitionCHROMAT_FILE: MSMg01no443_n07.b1 PHD_FILE: MSMg01no443_n07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:33 2005CHROMAT_FILE: MSMg01no443_n07.g1 PHD_FILE: MSMg01no443_n07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATAACCAACCGAGGATAGCCGAAGGCGCTTCTTTTTCCTAAAAAAAGAG
AAAACCCTGATTTTCTCACCAAAAATAAACCCACAAAACTGATTTAAATT
TTATGGACAAAAAACAAATAATAACCGACGGGGTCATATAGAAAAAACAT
GAAATAACGAGCCCATAATCTCCCACATTAACTATTTTTTCAACCCCCTC
TCACGCATAGTTTTTACGGGGACCCCTATATTATCTTAGATAGTGCGTTC
CGCTAACCCACATTAAAATGTATTTTTATATAATTTACAGAGAAAATTCC
CTTACCTCAAACTTATAACACCCCCCTTATTAACATGCTTGGACGTCGTT
TACTCCCCCTGTTTTTAACCCAATAAAAACCAACCAGACCGCTTATTTCT
CACACCCTTTACTACTTATGCTCTTACCTCGCTATTTTAATACCAAAAAA
ATATAAAGGAGCGCGCCCGAAAAAAAAAAAATTTGCTCTTTTTGATCACC
CCCAATATCACGCGATAAACAATATACCTGGCGAACGCCACTAAATACTC
CCACTGAGATGATAGCCGAAGGAACCTCACTCCACTTCAAATAAAATACC
GCAAACACGTTTAATACCAGATAAAAATATTGCATCCACATTTTGTGGCG
CACAAAACGTCTAAAAAATATTATTATGGCCGGGTTATGATACATTGTAT
ATCACATAATTAAAAAATTTATATACTCCCCAAACGACCCAAACAAATAA
TACACCAGGAGACAACTTTGGCACAAAAACATAATATTCAGCGATGTATC
CGACACGGCTCGAAACACAATCGTCAGGTAGAATAATCGTCACCGGAGAA
CCCTGTTTAATAATATCGTTTCCGACTAGCGTATTCTACGTAAATAACTG
AC
TTTTTCAATGCATCGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTGAAAATAATTCTTGTACAG
AGTAAATTAATCCAGGGACCTAGATGATGAAAATTAAGGTATTATATTAA
ATAGGAAGAGAAAAAGGTAAATCAAACATATATAACATCTAACTCATTAA
TTAGATTGTATATTTAGACACAGAATATTTTTATTAAATATCACTTTGAA
AAAATTTTATTTCACTTTTTCTTCCAATATTTACTATTTTATTTGAGATT
CCTCTATTGAGAATTCTCTGGCTTTGTTTCCCACTTTTAATTGGCTTATT
TCACTTGATGTATCTAACTTCTTGAGTTCTTTGTAAATTTTGAATATTAG
ACCTCTGTTGAATGTACAGTTAGTGAAGATCTTTTCCCATTCTCTGGGTT
GCTGTTTTATCCTATAGATGATATCCTTAGCCCGGTATAAGCCCCTCCCC
TACCTGAGGCAAAATCTATTATTTTATTAACTCGTTGATAAATCGTTGAA
TTGTCTCACGATGCCGTTTTTTTGTTTCCTTTCGCTTTTACGCCTTTTCA
ATTTTATCCCCCCCCATATTTTTATGGGTCTCCTCCTCCTTTTCCCTCTT
TTTCATCCCCTTTTTCCCCTTTACTTCTCTTCCCCGCTCCCCCCCTAATC
CCCTCCACTTTCTCATTCCCTTTTTTTTATCCCTTTCCTCCCTCCAATTA
TCTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_n07.g1 MSMg01no443_n07.g1 CHROMAT_FILE:
MSMg01no443_n07.g1 PHD_FILE: MSMg01no443_n07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:33 2005
         (371 letters)



>mm_chr7_49334412_49335182
          Length = 771

 Score =  679 bits (351), Expect = 0.0
 Identities = 367/373 (98%), Gaps = 2/373 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtgaaaataattcttgtacagagtaaattaatccagggacctagatgatgaaaattaag 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 agtgaaaataattcttgtacagagtaaattaatccagggatctagatgatgaaaattaag 260

                                                                       
Query: 61  gtattatattaaataggaagagaaaaaggtaaatcaaacatatataacatctaactcatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtattatattaaataggaagagaaaaaggtaaatcaaacatatataacatctaactcatt 320

                                                                       
Query: 121 aattagattgtatatttagacacagaatatttttattaaatatcactttgaaaaaatttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 aattagattgtatatttagacacagaatatttttattaaatatcactttgaaataatttt 380

                                                                       
Query: 181 atttcactttttcttccaatatttactattttatttgagattcctctattgagaattctc 240
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 atttcactttttcttccaatatttattattttatttgagattcctctattgagaattctc 440

                                                                       
Query: 241 tggctttgtttcccacttttaattgg--cttatttcacttgatgtatctaacttcttgag 298
           ||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||
Sbjct: 441 tggctttgtttcccatttttaattggggcttatttcacttgatgtatctaacttcttgag 500

                                                                       
Query: 299 ttctttgtaaattttgaatattagacctctgttgaatgtacagttagtgaagatcttttc 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttctttgtaaattttgaatattagacctctgttgaatgtacagttagtgaagatcttttc 560

                        
Query: 359 ccattctctgggt 371
           |||||||||||||
Sbjct: 561 ccattctctgggt 573


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 771
Length adjustment: 9
Effective length of query: 362
Effective length of database: 762
Effective search space:   275844
Effective search space used:   275844
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)