BAC Information

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BAC

Clone NameMSMg01-444B20
Chromosome7 (Build37)
Map Location 69,026,817 - 69,027,188
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041229, LOC625287, D0Kist2, LOC100041248, LOC100041259, EG664943, B230209E15Rik, EG620934
Downstream geneLOC100041293, Ndn, Magel2, Mkrn3, Peg12, Atp5l-ps1, EG665038, LOC669222, LOC384631, LOC622243, EG622251
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-444B20.T7 (MSMg01no444_b20.b1)MSMg01-444B20.TJ (MSMg01no444_b20.g1)
ACCAG533359AG533360
length757753
length of high quality
(start - end)		464 (76 - 539)422 (77 - 498)
definitionCHROMAT_FILE: MSMg01no444_b20.b1 PHD_FILE: MSMg01no444_b20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:55 2005CHROMAT_FILE: MSMg01no444_b20.g1 PHD_FILE: MSMg01no444_b20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCC
GCGGAATTCCAAGTCAGTATCTGATTTCTGAATGAAGTTATTACATGAAA
TTAAACTGATCTGTCCTCTAAATTTCCCAAAAATTTACATAGATGATCAG
TACTGAAAAAGGCTCACTGGAATCAACATATATATTCTAATGACCTTCTG
TTCCAAGCAATGTAACTCTAGTTGAAGAAACACACATACATACACACACA
AAACAAAACAAAACAAAACAAAACAAAACAAGAGAAAACACTAGTAAAGA
AGCCCTCAGGGCCAGCAGAAAGAATGTATACAGGCAAGCTCGAGAGTTAG
GAGGTGGGAGGACCTTCTAAAATGTACCAGAGTCCTGGGAGGTGAGAGAT
GCTCAGAACATAAAGGGAGGGACCTAAGATGAAATGAGCAACAGTTGGGA
GAGGGAACTTGTAGAGTCCATCTCCAGTAGAAAGACAGGGCATCAAGTGG
AGGGATGGGGTTGCCATCCCACAGTCAAAAACTCCGACCCAGAACTGTTC
CCGTCTAAAAGAACTGCAGGNACAAAAACGAAGAAGAGACTGAGTGAACG
AACCTACAGTGACTGACTTATCTTGGACTCCATCTTAAGAGAAAGCTCCT
AAGTCCTGAACTTATATTGGTGCCACGGGAAGCCTCAATAAAAAAACTAT
ATAGGTTGCTCCCTGAAAGGACAAAAAAATCTCCTGAAGGAATCCAAGCC
GAAATTT

NACGATGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCACACCCCTAAGCCCCTTACCCCA
TAAAAACCCCCAGCTTTTGAGCCTTGGGGCTGACATCTGTTATCTCCTGT
GTGGGATGCATGTCGGTCTGGAGCTCCATCATTAAACGTCCTCATGTAAT
TACATCAAGAGATGGTAGTCTGTTCATGATTCTTGGGTGCATGCCGAATC
AGGAATTGGGTGAGGGTTTCCCCACTAGGTCTAACAATTTGGAGGTCCCA
CTGAGATCTGCGTGACACCTAATAACCCCGAAGGACCCTTTGGAGGTATG
TTTGTTTGTGTAAGTCTTGTATGTTGTCTGTTGTCTAAGTGTCTAAGTGT
GGCACCGTTGAATTTGTGTCTTGGTTTTTCAGTTCTGAGATTGTGGGTTT
GAATCCCACCTGTGTTACCAGCTCTGGTATTCTGTATTCTGGCAGCTGCC
ACTGTGGACTGTAACGACCCCAGTGCCTGTGTTATTAAATGGTCTATGGC
TCCACATTCTGCACCCCTGTAAATTCCTCCCTAGTGAAACCTGCAGGTTA
TTGTCTTCGCTAGGTAACTCCCCTGATTATCTGTCTTTGTTTGGCCCATT
TTTTTTTATTATTGATAACCATTCCTCTCTTCTTTCTTTTTTTTCCTTCC
CCCTATCCTCCACTCTTTACTTTTTTCACTTCTCCCCTTTCTTCCTCTTT
TCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no444_b20.b1 MSMg01no444_b20.b1 CHROMAT_FILE:
MSMg01no444_b20.b1 PHD_FILE: MSMg01no444_b20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:55 2005
         (464 letters)



>mm_chr7_69026817_69027680
          Length = 864

 Score =  661 bits (342), Expect = 0.0
 Identities = 363/372 (97%), Gaps = 4/372 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctgaatgaagttattacatgaaattaaactgatctgtcctctaaatttcccaaaaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ttctgaatgaagttattacatgaaattaaactgatctgtcctctaaatttcccaaaaatt 313

                                                                       
Query: 61  tacatagatgatcagtactgaaaaaggctcactggaatcaacatatatattctaatgacc 120
           ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct: 312 tacatagatgatcagtactcaaaaaggttcactggaatcaacatatatattctaatgacc 253

                                                                       
Query: 121 ttctgttccaagcaatgtaactctagttgaagaaacacacatacatacacacacaaaaca 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ttctgttccaagcaatgcaactctagttgaagaaacacacatacatacacacacaaaaca 193

                                                                       
Query: 181 aaacaaaacaaaacaaaacaa----aacaagagaaaacactagtaaagaagccctcaggg 236
           |||||||||||||||||||||    |||||||||||||||||||||||||||||||||||
Sbjct: 192 aaacaaaacaaaacaaaacaagagaaacaagagaaaacactagtaaagaagccctcaggg 133

                                                                       
Query: 237 ccagcagaaagaatgtatacaggcaagctcgagagttaggaggtgggaggaccttctaaa 296
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ccagcagaaagaatggaaacaggcaagctcgagagttaggaggtgggaggaccttctaaa 73

                                                                       
Query: 297 atgtaccagagtcctgggaggtgagagatgctcagaacataaagggagggacctaagatg 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72  atgtaccagagtcctgggaggtgagagatgctcagaacataaagggagggacctaagatg 13

                       
Query: 357 aaatgagcaaca 368
           ||||||||||||
Sbjct: 12  aaatgagcaaca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space:   387716
Effective search space used:   387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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