BAC Information

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BAC

Clone NameMSMg01-444G09
Chromosome7 (Build37)
Map Location 13,960,257 - 13,960,482
singlet/doubletsinglet
Overlap geneLOC666225
Upstream geneZfp551, EG666065, Zfp606, 2900092C05Rik, EG637908, EG666085, Vmn2r55, LOC629079, LOC629081, EG232875, LOC100043128, LOC100042515, Zfp329, Zfp110, Zfp128, Zscan22, Rps5, 2310014L17Rik, 1810019N24Rik, Zfp324, Zfp446, Slc27a5, ZBTB45, LOC100042553, Trim28, Chmp2a, Ube2m, Mzf1, V1rj3, LOC100043156, V1rk1, LOC666177, EG232887, V1rj2, 6330408A02Rik, Lig1, Pla2g4c
Downstream geneCabp5, LOC666232, Gm767, LOC666243, 9230107M04Rik, EG666256, LOC666267, LOC100042624, LOC100043194, Sult2a1, EG620627, EG434121, EG629203, LOC677512, EG629219, EG434123
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-444G09.T7 (MSMg01no444_g09.b1)MSMg01-444G09.TJ (MSMg01no444_g09.g1)
ACCAG533575AG533576
length749738
length of high quality
(start - end)
523 (46 - 568)226 (374 - 599)
definitionCHROMAT_FILE: MSMg01no444_g09.b1 PHD_FILE: MSMg01no444_g09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:17 2005CHROMAT_FILE: MSMg01no444_g09.g1 PHD_FILE: MSMg01no444_g09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGGATCCGCGG
AATTCACCTGGATCTGAGAACATCAGCTAGCCTTTGAAACTCTCAAAAAG
ACACTGCTGCAGGCTCTGGCATTGACCCTGCCAGATTTAAACAAACCTTT
CACCCTATACATTGATGAAAGAAATGGAGTGGCAAGGGGAGTCCTTACCC
AGGTTTTGGGACCATGGAAGCGCCCGGTAGCCTACTTATCAAAGAAACTG
GACCCTGTGGCCAGTGGATGGCCCTCCTGCCTGCGAGTGATAGCAGCCAC
GGCCGTGCTAGTAAGAGATGCTGTATAACTGACTATGGGCCAGAATGTTA
CCATAGTGGCCCCACACTCTCTTGAGAGCATCGTCAGGCAACCACTGGAC
CGCTGGATGACCAACACCCAAATGACGCACTACCAGAGCCTATTGCTGAC
AGAGAGAGTAAGTTTTGCACCCCTAGCCATTCTCAACCCCGCCTCCTTAC
TACCTGAGGCTGACGAGGCCCCTGCACATAAGTGTGAAGAAATACTGGCA
GAAGAGACTGGAATCCGGCCAGACCTCATAGACCAATCTTGGTCAGGGGC
GATGACTTGGTTCACGGACGGAAACAGCTTTGTGGTAGAAGGTAAATGGA
TGGTTGGGGCATCCATACCGCATGGGAAATCTGTCTTATGGCGCTATCAG
CCTGTTGTAAGGTAACTCTGCTCTAAAAGCGGAATTAATCCCCCTCTTC
CCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTACCAGCAGAAATCCATCTGATCCCTTACTTACCTCT
CAGGAAAGTCAAGTCTCTCTCACGCTTAGGTCTAACTAGTTTTCCATTCT
CAAATCTGCTTCCAAACTCTGTGATGGGGACATAAGCCCCAAGTGCAAGG
TAGCCAGCATGATGAGGAGTGAATTCAAACCAGGAATCTGGAGAGGCAAT
ATGAGGGTAAACTACATGCTCTGAGCCTGAAACAGCAGATGCTTAGCATG
GGGGAATCCATAGAGTTNGGTANGTCAAACAAGAGACTACCACATAGAGA
GCTGTCTAATCTCAAATTAACTGGGGATTCTTCTCAATATGTCTAAAAGC
CTATTCAAGTGGAAATGTGTCATTATTTCAAAAGAACCCTGTTATCATTA
CTGCCCCAATCTTAAGCCCCTTTTCCTCCAATTCATAACAGCTGCAACTC
TAGAATGTGGAATGACGACGACTCTAGAAACACTATAATATGAGGATTAC
CTGGGGCACTGTTGAATGGATGAACTATTTATTGTAAGAAGAAAAATCAC
ATGACCATGTTTGCTCTAGAAACTTCTATCAGGNAGCTGTGGAATATTTT
TATGAATGGTACAGGTAAACCAATGAGGAATTAATTAAAGAATCTTCCAG
ATAGAAGCTGGAACTTGGCCTGATAAGTATTTTGTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no444_g09.g1 MSMg01no444_g09.g1 CHROMAT_FILE:
MSMg01no444_g09.g1 PHD_FILE: MSMg01no444_g09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:17 2005
         (226 letters)



>mm_chr7_13960057_13960682
          Length = 626

 Score =  414 bits (214), Expect = e-120
 Identities = 223/226 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gggattcttctcaatatgtctaaaagcctattcaagtggaaatgtgtcattatttcaaaa 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gggattcttctcagtatgtctaaaagcctattcaagtggaaatgtgtcattatttcaaaa 367

                                                                       
Query: 61  gaaccctgttatcattactgccccaatcttaagccccttttcctccaattcataacagct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 gaaccctgttatcattactgccccaatcttaagccccttttcctccaattcataacagct 307

                                                                       
Query: 121 gcaactctagaatgtggaatgacgacgactctagaaacactataatatgaggattacctg 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 306 gcaactctagaatgtggaatgacaacgactctagaaacactataatatgaggattacctg 247

                                                         
Query: 181 gggcactgttgaatggatgaactatttattgtaagaagaaaaatca 226
           |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 246 gggcactgttgaatggatgaactatttattgtaagaaggaaaatca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 226
Length of database: 626
Length adjustment: 9
Effective length of query: 217
Effective length of database: 617
Effective search space:   133889
Effective search space used:   133889
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)