BAC Information

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BAC

Clone NameMSMg01-444I04
Chromosome7 (Build37)
Map Location 112,766,109 - 112,766,222
singlet/doubletsinglet
Overlap geneTrim3
Upstream geneOlfr656, Olfr657, Olfr658, LOC667882, Olfr659, GA_x5J8B7W3SPQ-80592-80214, Olfr661, LOC625495, Olfr662-ps1, Olfr663, Olfr664, EG625530, LOC100042613, LOC233637, Dub1a, Dub1, Olfr665, Olfr666, Olfr667, Olfr668, Olfr669, EG545987, Olfr670, Olfr671, Olfr672, GA_x5J8B7W6B6J-189947-189022, Olfr674-ps1, Olfr675, Olfr676, Olfr677, LOC667987, Olfr678, Olfr679, Olfr680-ps1, Olfr681, Olfr682-ps1, Olfr683, Olfr684, Olfr685, Olfr686, EG668035, Olfr688, Olfr689, Olfr690, Olfr691, Olfr692, EG545989, 4632419K20Rik, Cnga4, EG244189, Cckbr, Prkcdbp, Smpd1, Apbb1, Hpxn
Downstream geneArfip2, Fxc1, Dnhd1, LOC100042811, LOC672646, 1500003O22Rik, Ilk, Taf10, Tpp1, Dchs1, Mrpl17, 9130208D14Rik, LOC626055, LOC100042856, LOC100042047, EG668108, EG668117, Gvin1, LOC672660, LOC100042097, LOC668128, LOC634394, EG209380, EG668139, Gm1966
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-444I04.T7 (MSMg01no444_i04.b1)MSMg01-444I04.TJ (MSMg01no444_i04.g1)
ACCAG533660AG533661
length773764
length of high quality
(start - end)
114 (125 - 238)---
definitionCHROMAT_FILE: MSMg01no444_i04.b1 PHD_FILE: MSMg01no444_i04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:26 2005CHROMAT_FILE: MSMg01no444_i04.g1 PHD_FILE: MSMg01no444_i04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAAAAATTGGGGCGTTAAACGACTCCTATTTCTTCCAGAACCGCGGAATT
CACCCTTTTCCTTCCCACGACTACCTGTGAGCAAGAGATGAGAAGGGAAA
CATGAATGAACGCTGAGATTAGCCTGAGCCTCGCTTCCCTACTCCCCAAA
TCCCTGTCTGAGTCAACTCCTTCCCCCACTACCTTTCCCTGGGCCCCTAC
CAGCCCCTCCATTCACCCTTCATTTAACTCTGCCCTTAGCCTCTCATTGT
CTCTGTGTTCGTCCCCTCTTTTTTCCCCCTTATTATCTCCCTTCCTCCCG
CTTGTTTGTCTTTTTTTCACCTACGCTGCATATGGACCTTGTCCTAGGAA
CTGTCTTCTGGTGCACACTACTGCTAGTACCTTCGCTTCTATCTGACTCG
TGCGCTTTCTTATCTTTCTGGCTAAGGCGTTTTTCTTCCCATGTCCCAAT
GCTATTCCCCACCCAAAAGGGTTCTCCCCGCTCCGCCCGCCTTTATTTCT
CCTCTTGCAGCTGACCATGTCCCCTTTTTGTCCCTTTTCCCGCCCCCTCT
TTCTTCACCGTTTGTTTTACTTTCTCTACCCCTTTCGCCCCCCGTCTCCC
TTCCTATTTCTTTTCCCCTTTTCCCCCCCCTGCCCCCTCTCTCCCTCTTT
CCTCCCGTCCCCTTCCCCCCGCATTTTTGAAAGATGTTTTTGCCTCCTCT
CTCCTTTTGCCCCCTTTTTTCCTTTCTGTTTCCCCTTCCTCCTTCTCCTT
TACTCTCCTTGTCTCCCCCCTCA
TCTGATTGTGTGTGGAGATGAAGGAAAGTTTTTTGAGTGGTTGTTGTTAG
TGTTTTTTTAGAGGGGGGGGGAGGAGAGTTTTAAGTTTTTTTTTTATGTT
AGTTTAGTTAGAGGAAAGAATAGGGATGAGGGTATTAGATGGGGTAGTAA
AGTATAGGGGGATTGTTTGTTTTTTTGGGGGGTGGTTAGGAATAATTTTG
GAAAGCTTTTTTGTTTATAGGGGTGCTGTGTTTATGTATAGGGGAGAGGT
GGTTTTTTTTCTTCCCCAAAAAAAAAAAAGGNGTGTTGAGAAGGTTTNTT
TATGGNTGGGNNAAGGGGGGGAGGTTATTTCCTCCACAAAAAAAAAAAGA
ATTCTATTTTGAGTNTTTTTAAAANTTTTNATNTTTTTATGGGGGGTGNN
TTGGNTAAAGATTTANTTATTTTCTTCCGTNTTTTAATAAGTGGTCNTTT
TAACACTAAGAGGAGAGGGTGAACACATATNAGGGGGGGCTATTATTTAA
GAAATATAATGGAGGGGAAGTTTGGTTTGTAGTTAGATATGGTTATGGTG
GTAAGAGGAGAGGGAGAGGGGAGAGGTGAAGTATGAAGAGTGAGGCGTAA
GAATAGAGAGGGATGAGGAGAAGGGAGAAGAAGTTGATTTTGTGTATGTT
GCTGGATGATTGAAGTGAGAGTGAGAGGGATTTTGGTTGTGATAGGTAAG
TAGAAGAAAGAAAGAGGTATAGGTGGTATACAGAAAATTGATATTATAAT
AAAGAAAGAATGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no444_i04.b1 MSMg01no444_i04.b1 CHROMAT_FILE:
MSMg01no444_i04.b1 PHD_FILE: MSMg01no444_i04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:26 2005
         (114 letters)



>mm_chr7_112765909_112766422
          Length = 514

 Score =  205 bits (106), Expect = 7e-58
 Identities = 112/114 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgagcctcgcttccctactccccaaatccctgtctgagtcaactccttcccccactacct 60
           |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 201 tgagcctcgcttccctactccccaaacccctgtctgagccaactccttcccccactacct 260

                                                                 
Query: 61  ttccctgggcccctaccagcccctccattcacccttcatttaactctgccctta 114
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttccctgggcccctaccagcccctccattcacccttcatttaactctgccctta 314


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 114
Length of database: 514
Length adjustment: 8
Effective length of query: 106
Effective length of database: 506
Effective search space:    53636
Effective search space used:    53636
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)