BAC Information

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BAC

Clone NameMSMg01-445A02
Chromosome7 (Build37)
Map Location 94,396,841 - 94,397,243
singlet/doubletsinglet
Overlap geneNox4
Upstream geneVmn2r76, Olfr310, Olfr309, Olfr308, Olfr307, Olfr306-ps1, Olfr305, Olfr304, Olfr303, Olfr301, Olfr1531-ps1, Olfr300-ps1, Olfr299, Olfr298, Olfr297, Olfr296-ps1, Olfr295, Olfr294, Olfr293, Olfr292, Folh1, EG546983, Vmn2r-ps87, LOC637896, EG621430, LOC621477
Downstream geneTyr, Grm5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-445A02.T7 (MSMg01no445_a02.b1)MSMg01-445A02.TJ (MSMg01no445_a02.g1)
ACCAG534038AG534039
length720735
length of high quality
(start - end)
408 (37 - 444)244 (66 - 309)
definitionCHROMAT_FILE: MSMg01no445_a02.b1 PHD_FILE: MSMg01no445_a02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:04 2005CHROMAT_FILE: MSMg01no445_a02.g1 PHD_FILE: MSMg01no445_a02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCCT
AAGTAACCACACAAAGTATAAAAGGTGTTATACAATTGTAGATTTATCAT
CACTGGAGAGGAAAACATATTCTAAAGAGGACACTTATTGCTTTTTTTTT
CATAAAATTGTAACTATTTAAAATCACTTCAGTTGAATTCAGTGCAACTA
GCTTCACTTTCATGATTGGAGGACATAGGTTTATCTTTTAATCTTAGTTC
TCTGTGTAGTGATTAGGACATATCAAGTCTGCAGTAAGTTGCAGCTGAAT
TAATTGATATTTTTGAAACAGATTACTGTATTAAAGGTCTTGATTGTGAC
ATCTTCTTAACATTTAACACCACTAGCTTTAACTATTGGGGTCAGAAACA
TTGTTTCAGAAAAGAAAAAAGAGACCCCCTCCCTTATTGAAGATTCTGAA
ATTAATATGCTTGTCCTTTCTCATCTATCTAAATTTGGTCTATTTATCTA
GAACTGTTCTTTACATTGCTTTCTAAATAGGCCCAGAGAATAAAGTATTT
ACTATTTTTCAAGTGCCTTACACTCTGATGCAAAACAGCAACCAAAACCC
ACAAGCCAACCAACCAATCAAATAATTGTAGGTTAAAAAAACCCCTTAAG
AAGAAATTCTCTGATGAGTTACCCAGGACGCCTAGTTTTTTCTTCTCCTT
TCTTGGAAACTCCCTAATCC
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTCAGACAAATGGAGATTCCCTACAGATATTTAAA
AGAACACCCAAGTTATTCTCATATGCAAGAATCTATGGAGGCCAAGGAAA
AGGAGGGGGGGTTGTAATATTGCATTATTCATGATAAGGTCAGCTAGAGC
AGAACCCCCTGGTGTTAGCATAAATTGTGACTAGGGTGTGAAATCCTTAC
CTGGTCCCTGTCATTAGCTGACTCTAGGCAGGGCTGTTTTATTTTTACTG
TAAACATTGTCTTTTTCCTGACAGTCCTTTGAAGCCATTCCTGTTTTGTG
TCAGATACTTCAATGTACCTTGCCTGCTATGATACCCTACTCCTTTGTTT
TCTGTATTATATAAAAATGAGGCTAACTTTGACAAAATCACATCCAGATA
CAGCACTCCCTTGTGTTCTTGTCTGTTTGTCACTCATTTTGTCGCCAACT
CCATGCCCATCTTTCTGGAACCCTAATTTCCCATGGATTGAGTGGTGGCG
TTTGTCGATTCTTATCCGTGTTACCGGATTTTTTTTGTTCTTCTTCTCCT
TTGCCTCTTTAATCACGCCCTTTATTACCTGACCCCTGAGAATCTTTTTT
TTCTTTTATACATTCACTATCCCCCACTACTCTCTCCTCCTTTTTTTTTT
TTATCGTGTTTTCTTTGCCTCTCTTTACCTTCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no445_a02.b1 MSMg01no445_a02.b1 CHROMAT_FILE:
MSMg01no445_a02.b1 PHD_FILE: MSMg01no445_a02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:04 2005
         (408 letters)



>mm_chr7_94396637_94397443
          Length = 807

 Score =  758 bits (392), Expect = 0.0
 Identities = 401/404 (99%), Gaps = 1/404 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcctaagtaaccacacaaagtataaaaggtgttatacaattgtagatttatcat 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcctaagcaaccacacaaagtataaaaggtgttatacaattgtagatttatcat 264

                                                                       
Query: 65  cactggagaggaaaacatattctaaagaggacacttattgctttttttttcataaaattg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 265 cactggagaggaaaacatattctaaagaggacacttattgctttttttt-cataaaattg 323

                                                                       
Query: 125 taactatttaaaatcacttcagttgaattcagtgcaactagcttcactttcatgattgga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 taactatttaaaatcacttcagttgaattcagtgcaactagcttcactttcatgattgga 383

                                                                       
Query: 185 ggacataggtttatcttttaatcttagttctctgtgtagtgattaggacatatcaagtct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ggacataggtttatcttttaatcttagttctctgtgtagtgattaggacatatcaagtct 443

                                                                       
Query: 245 gcagtaagttgcagctgaattaattgatatttttgaaacagattactgtattaaaggtct 304
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 444 gcagtaagttgcagctgaattaattgatatttttgaaacagattactgtattaaagctct 503

                                                                       
Query: 305 tgattgtgacatcttcttaacatttaacaccactagctttaactattggggtcagaaaca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgattgtgacatcttcttaacatttaacaccactagctttaactattggggtcagaaaca 563

                                                       
Query: 365 ttgtttcagaaaagaaaaaagagaccccctcccttattgaagat 408
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttgtttcagaaaagaaaaaagagaccccctcccttattgaagat 607


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 807
Length adjustment: 9
Effective length of query: 399
Effective length of database: 798
Effective search space:   318402
Effective search space used:   318402
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)