BAC Information

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BAC

Clone NameMSMg01-445A13
Chromosome7 (Build37)
Map Location 73,288,719 - 73,288,947
singlet/doubletsinglet
Overlap geneChsy1
Upstream geneTjp1, Gm1693, EG665234, Tarsl2, Tm2d3, LOC665241, Pcsk6, Snrpa1, H47
Downstream geneLrrk1, Aldh1a3, Asb7, Lins2, Lass3, Adamts17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-445A13.T7 (MSMg01no445_a13.b1)MSMg01-445A13.TJ (MSMg01no445_a13.g1)
ACCAG534060AG534061
length733749
length of high quality
(start - end)
237 (66 - 302)480 (65 - 544)
definitionCHROMAT_FILE: MSMg01no445_a13.b1 PHD_FILE: MSMg01no445_a13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:07 2005CHROMAT_FILE: MSMg01no445_a13.g1 PHD_FILE: MSMg01no445_a13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXATGCGTGAGCTGGTGCGGAATTCTTCAA
TTTGCTAATAGCCTGGCACAAGTACCTTAGAGAAAAACACAGCTACTTCT
CATAAAATTACATACCTCCCCTGTAACCTAGTAATTCTACTTCTAGATAT
TTACTCTTGATCTTATTTCTATAGGAAGTCCAGGAGTAGCAATTTAATTT
CCTTTGTGCCAGCCCATGTGATCAGGCCTCATCTTTTATAATGAAGGCAC
TAAGAAGCCAGCACTGAAATGTGCCAGCAGTCATCAGGTGCACCTCCTGT
CTCCCTACTGCCAACCTCAGCTTCACCACACATCTGCTAGAGATGTATTA
TTCTCACATCACTGGGCATGGCCCATTTCACCCATCTGCCAACCCTGCCT
GAAGTATACTGACCAACTGCTAACCAGGACCTGTGCAAAACAAAATCAGA
GAGACTTACTTTATTACAATGGGAGGCAATGATTAAGATATGTGTTACTC
TCACTTAAGTCCTTCATGCTTTCATCTGCCATCTTAAAGAAAATACAATT
GAGTACAATCTCTGTAATGTGTCTGTTCACCCTGGCAACTGAATGCTGTG
TGTCAATACCGAGAAATACCAAGTCTTGATTTTTTTTTTAGCTTANAATC
CTATGAGGTCTTCTACCTAGTATACTATCCATATGAACTTACAATGTTAG
GGAAAAAGATGTTTATATTTAAAAAGGCTTTTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXAGTAGTGGCTCTTTTCTGTTTCTCTTTGAACTACAA
AAAATGGAGGGGCCCAGGGGCTTGTGGAGATAGCTGAGGGAAGACCTTTG
TCTTGGTTAGGGTTTCTATTGTTGTGAAATACCATGTTCAAAAGGCAAAT
TGGGGAGATAAGCATTTATTTGGCTTATACTTCCACATTGCTATTCATCA
AAGGAAGTCAGGACAGGAACGGAAGAGGGCTGGATCCTGAAGGCAGGAGC
TGATGTTTTTTTTCATGGAGGGGTGCCGCTTCCTGGCTTGCTCCTCATGG
CTTGCTCAGCCTGCTTTCTTATAGAACCCAGGACCACCAGCTTAGGGGTG
GCACCACCCACAATGGGCTGGGCCCTTCCCTATTGATCAGTAGTTAAGAA
AATGCCTAATAGGTGAATCTCATGGGGCATTTCCTCAACTGAGGCTCCTT
TCTCTCAGATGACTTTAGTTTGTGCCCAATTGACAAAGGAAACCAGCCAG
TACATTCTAGTCTGGAAGGAAAAGGGGGGGTTCATCATATCTTCAAAGAA
GGGGTGAGCTCCCCCTGAATGTGTTCTAGAAATGTCTTTTTTTCTTTCGG
AAGGCTCCTCCCAGGAAAGGCATGGATCTTTCCAAACGGTTTGGGGCACC
TTCAATGGTCTTGCCTTCTTATAGTAGTGTGGTCCTGCCCCATATGCGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no445_a13.b1 MSMg01no445_a13.b1 CHROMAT_FILE:
MSMg01no445_a13.b1 PHD_FILE: MSMg01no445_a13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:07 2005
         (237 letters)



>mm_chr7_73288519_73289155
          Length = 637

 Score =  404 bits (209), Expect = e-117
 Identities = 224/229 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcacaagtaccttagagaaaaacacagctacttctcataaaattacatacctcccctgta 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 429 gcacaagtaccttagagaaaaacacagctacttcttataaaattacatacctcccctgta 370

                                                                       
Query: 61  acctagtaattctacttctagatatttactcttgatcttatttctataggaagtccagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 acctagtaattctacttctagatatttactcttgatcttatttctataggaagtccagga 310

                                                                       
Query: 121 gtagcaatttaatttcctttgtgccagcccatgtgatcaggcctcatcttttataatgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||   ||||||| |
Sbjct: 309 gtagcaatttaatttcctttgtgccagcccatgtgatcaggcctcatcacctataatgca 250

                                                            
Query: 181 ggcactaagaagccagcactgaaatgtgccagcagtcatcaggtgcacc 229
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 ggcactaagaagccagcactgaaatgtgccagcagtcatcaggtgcacc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)