BAC Information

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BAC

Clone NameMSMg01-445C17
Chromosome7 (Build37)
Map Location 122,626,113 - 122,810,805
singlet/doubletdoublet
Overlap geneSox6
Upstream genePde3b, Cyp2r1, Calca, LOC100043295, Calcb, Insc, EG627967, LOC668472
Downstream geneLOC100042779, 1110006G14Rik, EG668479, LOC100043313, 1110004F10Rik, Plekha7, Rps13, Pik3c2a, LOC100042798, Nucb2, LOC100043320, EG668484, LOC668485
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-445C17.T7 (MSMg01no445_c17.b1)MSMg01-445C17.TJ (MSMg01no445_c17.g1)
ACCAG534163AG534164
length728749
length of high quality
(start - end)		247 (317 - 563)400 (69 - 468)
definitionCHROMAT_FILE: MSMg01no445_c17.b1 PHD_FILE: MSMg01no445_c17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:17 2005CHROMAT_FILE: MSMg01no445_c17.g1 PHD_FILE: MSMg01no445_c17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,810,559 - 122,810,805)(122,626,113 - 122,626,511)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGTG
GATTAACATCAGTAAATCTGAAGTCACTGGAATAAAGGCCCCTCAGGGGG
GGAAAAAAAAACGTGTCAATTTTAAAGGTCTTTCCTAACTGAAGACCATT
TTGTGATAGAGCCAAAGGTTAATAAAATCAGTAGTGAATGTAGCAATTTT
ACAGATAAGCTATTCACAACAAGTGTAGTTACTTGAATAAAAAGCTAATT
CAGTTCTAAAATGCCACATGCAGTAGCAGTGAATAGCTGCTTTTAGGTGC
TTTCCAGATTTTTTTAAAGTACAGAATCGCAGCACTCTTCTCTCGCCGCG
TCCCCGGCCGCCTGTAAATCGCTGTGAATGGGGCTGTGGGCTGACAGGCT
CTATTAAGACAAACTGCCTTTCTCATCGGAGAGATAAAATAAATCAGGTG
TTTAGTCAAATTAAAATACTTCAGCTGGAGCAGGCCCCGGGGAGCACTGA
TCCACCTTACTAATCCGAGAGAAACTCAAGACAGATGTGGTTTGGGGATA
AAGATGACCCCATGTAAGAAAAAAGGAAAGAAAGAAAAAAGAAAGGAAAA
GCCGAGCTGCAGCTGGCAGCTCGGTCTCTGCAGTTGGTGTATAGATACCG
TGTTGTAGTTGGAGGATACATACAGCTTACCGTGGAGGAACAAGCGTCAG
GTACCCACTCCCTGCGTGTGCCACCAGN

AGTGGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCAGGTAGGTTGCATGGCTCTGTGGCTGATGCT
ATAGGAGGGGGTGGAAATACAAGCCATCTTCTCAAATTATCTACTGAGAT
TTCTAAGCTGGTTCCTTACCAGCCAGTGCAGGAAACAGTATGTCCAATAT
TTATCGGTGTCTTACAGGCTTCTTTTGACCCCTTTAGATTTAAAATGAAA
ATGGTAGATTTCTAGATCACTTGGGGCACAATTATCTGGGAAACAATGCT
TCTGAGGTAGTACAAAATAAATACCTGACACAGGTTTATTTATTTTTAAC
AATCTTTACGTGTCTGCGTGTTAGACACTGTTCTTAGCATTTTCCATATG
CTAAGCCATTCCATCTTTAGAGGGACTCATGTTATTGGTGCTGTGGTTAT
CCTTATTCTACATATAGAAAACTGACAAGCAGAGAGATTAAGGAAGTTTT
CTAAGGGTAAGCGGGGCCTTCTGAGGAACAACGACTGAGGCATCCTAACA
TGGAGCTGGAACTGGCTTTCTCGGAGTCAGTGGCTTCAGTACTGTCCGGC
TCTGGTTTCAAATTGTGAGGAGGGGGCTCTGGTGTTAAGGGAATTATTTT
TTCTTTCCTTCCTGCGTATGGTAATATTAATTCGTGCCCCGATTACTGTT
TCCTTGGTTAACGCGCCTTCTTTTATTCATTTTACGCCGCCCTTCTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no445_c17.b1 MSMg01no445_c17.b1 CHROMAT_FILE:
MSMg01no445_c17.b1 PHD_FILE: MSMg01no445_c17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:17 2005
         (247 letters)



>mm_chr7_122810359_122811005
          Length = 647

 Score =  478 bits (247), Expect = e-139
 Identities = 247/247 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagtacagaatcgcagcactcttctctcgccgcgtccccggccgcctgtaaatcgctgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 aagtacagaatcgcagcactcttctctcgccgcgtccccggccgcctgtaaatcgctgtg 388

                                                                       
Query: 61  aatggggctgtgggctgacaggctctattaagacaaactgcctttctcatcggagagata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 aatggggctgtgggctgacaggctctattaagacaaactgcctttctcatcggagagata 328

                                                                       
Query: 121 aaataaatcaggtgtttagtcaaattaaaatacttcagctggagcaggccccggggagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 aaataaatcaggtgtttagtcaaattaaaatacttcagctggagcaggccccggggagca 268

                                                                       
Query: 181 ctgatccaccttactaatccgagagaaactcaagacagatgtggtttggggataaagatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ctgatccaccttactaatccgagagaaactcaagacagatgtggtttggggataaagatg 208

                  
Query: 241 accccat 247
           |||||||
Sbjct: 207 accccat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no445_c17.g1 MSMg01no445_c17.g1 CHROMAT_FILE:
MSMg01no445_c17.g1 PHD_FILE: MSMg01no445_c17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:17 2005
         (400 letters)



>mm_chr7_122625912_122626711
          Length = 800

 Score =  772 bits (399), Expect = 0.0
 Identities = 399/399 (100%)
 Strand = Plus / Plus

                                                                       
Query: 2   aggtaggttgcatggctctgtggctgatgctataggagggggtggaaatacaagccatct 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 aggtaggttgcatggctctgtggctgatgctataggagggggtggaaatacaagccatct 261

                                                                       
Query: 62  tctcaaattatctactgagatttctaagctggttccttaccagccagtgcaggaaacagt 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tctcaaattatctactgagatttctaagctggttccttaccagccagtgcaggaaacagt 321

                                                                       
Query: 122 atgtccaatatttatcggtgtcttacaggcttcttttgacccctttagatttaaaatgaa 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 atgtccaatatttatcggtgtcttacaggcttcttttgacccctttagatttaaaatgaa 381

                                                                       
Query: 182 aatggtagatttctagatcacttggggcacaattatctgggaaacaatgcttctgaggta 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aatggtagatttctagatcacttggggcacaattatctgggaaacaatgcttctgaggta 441

                                                                       
Query: 242 gtacaaaataaatacctgacacaggtttatttatttttaacaatctttacgtgtctgcgt 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gtacaaaataaatacctgacacaggtttatttatttttaacaatctttacgtgtctgcgt 501

                                                                       
Query: 302 gttagacactgttcttagcattttccatatgctaagccattccatctttagagggactca 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gttagacactgttcttagcattttccatatgctaagccattccatctttagagggactca 561

                                                  
Query: 362 tgttattggtgctgtggttatccttattctacatataga 400
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tgttattggtgctgtggttatccttattctacatataga 600


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 800
Length adjustment: 9
Effective length of query: 391
Effective length of database: 791
Effective search space:   309281
Effective search space used:   309281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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