BAC Information

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BAC

Clone NameMSMg01-445L11
Chromosome7 (Build37)
Map Location 102,159,058 - 102,159,609
singlet/doubletsinglet
Overlap genenone
Upstream geneEG545982, EG666816, LOC100040132
Downstream geneLOC666823, Frda-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-445L11.T7 (MSMg01no445_l11.b1)MSMg01-445L11.TJ (MSMg01no445_l11.g1)
ACCAG534581AG534582
length809738
length of high quality
(start - end)
54 (61 - 114)572 (67 - 638)
definitionCHROMAT_FILE: MSMg01no445_l11.b1 PHD_FILE: MSMg01no445_l11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:01 2005CHROMAT_FILE: MSMg01no445_l11.g1 PHD_FILE: MSMg01no445_l11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTCAAGACAGACCGCGGAATTCACATA
TTTACATATATATATATATATATATATATATATATATATATATATATATA
GAGAGAGAGACCCAGAGCGCGCGCGCGCGCTCGTTCTCCTATCAGATACC
CGAGTGTGTGCGCGAGAGCGTCCGAGCGAGAGTCACACAGAGCTGCTATT
GCGACAGAACACCGAGCAGCTCTGGGATCGCCCGTTTTTTTTTCCCATGC
TTGCATTCCAGTCCATCGTTTACCTGTCTAGACTTTGGACATCGCCCGAC
GCTTTTTCTCGTTTGACAAGAGCGCCCCACAGCCGCCGAAACCCGCCCAC
ATTTCTTCCCCCCCCCCCCCTCTTCTCTGACAATTCCCCCCCCCCAACTG
TCTGCCCGCGCACGCCATTACTGTAAACCCCCTGCGTGGCGCTTTCCCAC
TCTGTCACATGGCTTACCCAACCATATGAATCATTCCGAGACCGGAACCC
CCCGCGGCCCCCCGCTCCCCCCCGGAGTCCCCCTGCTTGCCTCCAGGTCC
TCCTCGTAGCCCCCTTCTCCCCTCGCCCCCTACTCCCCTCCTTCCCCGTC
ATTTTGTCCCCTTGTGCTGTCCTTAACACCACACACTTAACGCCCCCCTG
GCATCCTTTACTTTTTTTTTTTTGTGCCCCCCCAATCACGCGTTCCTCTA
CTTTTTGACCTACCCACCTCATGTTTCCCCTTTGCACGATCCCCTTTTTC
TATTGTTATCGCTTCCATCATTTTTTTTTTCCCCACCAATTTACACCCGC
ACCCCCCGG
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCTTTGACAGACAGACAGACAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGCTCTAAATCAATGAAATATGACAA
AGAACCCAGTTGTCTTTAAGTTACCAGTTTTTTCATGGATTATTGTGTGC
AAGAAATGAGTAATATCACCAGAAAAATAGTGTACCCAAGATGTTATTTT
CATAGATACCCACAAAATCCTTTCTTCCTAAACAAAATTTAGTGGTGTAC
TTGTGGCTTGTTATCACAGGTTGTTATTTTAATCTAATGCCAAACTATAA
GCACTCCTTTGAAAGCAAACCACAAATGACCACAGCTCATGTTGTTGTCT
AGTATCCTGTTGAGAAGCCCCTAAAATAGACTGCTATTCTCCTAAAATGC
AAATTTATACTGGCCTTATACTTTGCTTCTCAGAATATTTATATAACTTC
CACTTCTTTCTCAGAAATCCTATTTGATATTTATTATTTTTTCCTGATCA
CTCATATACCTACCCAGACATTTAAGTATACTCATAAAACTGTGTATCAT
TTTATGTAATAGGATATTTTTTCAAATGCCATAAATTCTCTTGATGGCTT
AGATGTTTTGGACAATTTTACACTAATTTTTTGTCCTTTAATGGAAACAT
CACCGTTCTTTTAAACGGAGGCTAATACTAAAAAATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no445_l11.g1 MSMg01no445_l11.g1 CHROMAT_FILE:
MSMg01no445_l11.g1 PHD_FILE: MSMg01no445_l11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:01 2005
         (572 letters)



>mm_chr7_102158838_102159809
          Length = 972

 Score = 1052 bits (544), Expect = 0.0
 Identities = 550/552 (99%)
 Strand = Plus / Plus

                                                                       
Query: 21  agagagagagagagagagagagagagagagagagagagagctctaaatcaatgaaatatg 80
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 agagagagagagagagagagagagagagagagagagagagctctaaatcaatgaaatatg 280

                                                                       
Query: 81  acaaagaacccagttgtctttaagttaccagttttttcatggattattgtgtgcaagaaa 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 acaaagaacccagttgtctttaagttaccagttttttcatggattattgtgtgcaagaaa 340

                                                                       
Query: 141 tgagtaatatcaccagaaaaatagtgtacccaagatgttattttcatagatacccacaaa 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 tgagtaatatcaccagaaaaatagtgtacccaagatgttattttcatagatacccacaaa 400

                                                                       
Query: 201 atcctttcttcctaaacaaaatttagtggtgtacttgtggcttgttatcacaggttgtta 260
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 atcctttcttcctaaacacaatttagtggtgtacttgtggcttgttatcacaggttgtta 460

                                                                       
Query: 261 ttttaatctaatgccaaactataagcactcctttgaaagcaaaccacaaatgaccacagc 320
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 461 ttttaatctaatgccaaactataagcactcctttggaagcaaaccacaaatgaccacagc 520

                                                                       
Query: 321 tcatgttgttgtctagtatcctgttgagaagcccctaaaatagactgctattctcctaaa 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 tcatgttgttgtctagtatcctgttgagaagcccctaaaatagactgctattctcctaaa 580

                                                                       
Query: 381 atgcaaatttatactggccttatactttgcttctcagaatatttatataacttccacttc 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 atgcaaatttatactggccttatactttgcttctcagaatatttatataacttccacttc 640

                                                                       
Query: 441 tttctcagaaatcctatttgatatttattattttttcctgatcactcatatacctaccca 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 tttctcagaaatcctatttgatatttattattttttcctgatcactcatatacctaccca 700

                                                                       
Query: 501 gacatttaagtatactcataaaactgtgtatcattttatgtaataggatattttttcaaa 560
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 gacatttaagtatactcataaaactgtgtatcattttatgtaataggatattttttcaaa 760

                       
Query: 561 tgccataaattc 572
           ||||||||||||
Sbjct: 761 tgccataaattc 772


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 78
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space:   540644
Effective search space used:   540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)