BAC Information

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BAC

Clone NameMSMg01-446C18
Chromosome7 (Build37)
Map Location 108,201,711 - 108,202,183
singlet/doubletsinglet
Overlap genenone
Upstream genePold3, 2610209A20Rik, Kcne3, LOC631577, Pgm2l1, Gpx2-ps1, P4ha3, Ppme1, AU020772, Ucp3, Ucp2, Dnajb13, LOC667112, Chchd8, Mrpl48, LOC100041155, Rab6, LOC100041167, Plekhb1, B930006L02Rik, LOC100041204, Tnfrsf19l, Arhgef17, P2ry6, P2ry2, LOC100049539
Downstream geneEG435996, Fchsd2, EG622673, Atg16l2, Stard10, Centd2, Pde2a, Art2a, EG630138, Art2b, Clpb, Phox2a, Inppl1, Folr2, Folr1, 3200002M19Rik, F930017I19Rik, 2400001E08Rik, Lrrc51, LOC667222, Numa1, Il18bp, Rnf121
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446C18.T7 (MSMg01no446_c18.b1)MSMg01-446C18.TJ (MSMg01no446_c18.g1)
ACCAG534930AG534931
length751756
length of high quality
(start - end)
512 (63 - 574)274 (316 - 589)
definitionCHROMAT_FILE: MSMg01no446_c18.b1 PHD_FILE: MSMg01no446_c18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:37 2005CHROMAT_FILE: MSMg01no446_c18.g1 PHD_FILE: MSMg01no446_c18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGCTATACGACTCACTATATGCAGAGAATGCGCGGAATTCACTATGTATT
ACAGGAAGAGTCCTCTTGCCTGCACCTCCTTGCCTGCTGGGATCGCAAGC
ATGCATCACTATGCCTGGCATTATCTGATGTGGGTAATTGAAGCAGAGCT
CCCTGCGAGCTGGGCAAGCACTTTACTGCACTGAGCTACATCCCTGCCTC
GTTTGACATTTGCTTTTTGAGGGCTACCCTGGGGAGGAATTCTAGGCCTT
GAACATACTGTACAAGAATTCTACCAGAGTTTCATTCCCAGTTCTTGGTC
TTTTGATTCGTANTTATCAGTGTATCTTATGAAATATGTTGGGAAGCTCA
GACTGGCTTCAGATATGCAATCCTCCTGCCTCAGCTTCCTGAGTGCTAGG
ATAATGGGTATGTGAAACCCAGTTTCACTCTCTGTATTTAAATTTTTTAA
ATTAAATTCTCTATTTTATTTTATGTGTGTGGGTGTTTTGTTATGCATGT
ACATCTTTATGCCTCTTGTAATTTTGATGCCTGCAGGCATCAGGATTACA
GCCATCTGTAGTTCCCTGGAACTGCAGTTATAGATGGCTGAGCCACTATA
TAGGAGCTGAGAATGTAACCTGGTTCCTCTGTAACATAACATTGCTCTTA
TTCTCTGAACTTTTTATTTATCTGCTTGGTTAGAATTCCGACCACTGTTC
AACCACAGTTTTATGCATATTTATGCTTACTACCCTGCTTGGAATGTTAC
T
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCCAAAATATCCAGGAAGACAGCTCTACACAGAGTAACCTTGTCTCTGAA
TGAATGAATGAATGAATGAATGAATGAATGAATGAATAAATAAATAAATA
AATAAATAAATAAATAAATAAATAAATAAATAAAAAGAATCTGGCACCTG
GAAAGATGGCTCAGTGGTTAAAAGCATGGCTGATTTTGCATATGATCCAG
GTTTATATCCTAGCACCTACATGGTGGGTTACAACCATGTCAACTCCAGA
CTCAGGGTATTGAATGCCCTCTTGACACTTGACACATGCTGGCAAAATAC
TTGTGTGTATAAAACTATAACAATAAGAATCTACAGCTTAGGAGAAAGTG
TTTGCAAACTGGGTTTCCGATAAAGAACTTTAACTTAGAACATTTAAGAT
CATGGCTGGATGTGGCAGCAACACCTTTAATCCTAGTACTTGGGAGGCAA
AGGCAGGCAGATCTGAGCTGAGGCTAGTGTGGTTTACAGAGTGAATTCCA
GGACAGCTAAGGCTACACAGAGAAATAAATATATGGGACTGAAAGTAAGT
AAATAAGAAATGAAAAACATAAAAGGAAACAAAATAGAATATATTAGCTT
TATATTCAGTAAAAAAATACAACCTTAATTTTAAAGATTGATGAAAGATC
TAAGTAAACTTTTCATCAATATGATGATATTAAATAACTACTAAGCCCCT
TGAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_c18.b1 MSMg01no446_c18.b1 CHROMAT_FILE:
MSMg01no446_c18.b1 PHD_FILE: MSMg01no446_c18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:37 2005
         (512 letters)



>mm_chr7_108201511_108202423
          Length = 913

 Score =  787 bits (407), Expect = 0.0
 Identities = 457/474 (96%), Gaps = 2/474 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcttgcctgcacctccttgcctgctgggatcgcaagcatgcatcactatgcctggcatt 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 201 ctcttgcctgcacctccttgcctgctgggatcgaaagcatgcatcactatgtctggcatt 260

                                                                       
Query: 61  atctgatgtgggtaattgaagcagagctccctgcgagctgggcaagcactttactgcact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atctgatgtgggtaattgaagcagagctccctgcgagctgggcaagcactttactgcact 320

                                                                       
Query: 121 gagctacatccctgcctcgtttgacatttgctttttgagggctaccctggggaggaattc 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |  |
Sbjct: 321 gagctacatccctgccttgtttgacatttgctttttgagggctaccctggggagggagcc 380

                                                                       
Query: 181 taggccttgaacatactgtacaagaattctaccagagtttcattcccagttcttggtctt 240
            ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 381 aaggccttgaacatactgtacaagcattctaccagagtttcattcccagttcttggtctt 440

                                                                       
Query: 241 ttgattc-gtanttatcagtgtatcttatgaaatatgttgggaagctcagactggcttca 299
           ||||  | | | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgagccaggatttatcagtgtatcttatgaaatatgttgggaagctcagactggcttca 500

                                                                       
Query: 300 gatatgcaatcctcctgcctcagcttcctgagtgctaggataatgggtatgtgaaaccca 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gatatgcaatcctcctgcctcagcttcctgagtgctaggataatgggtatgtgaaaccca 560

                                                                       
Query: 360 gtttcactctctgtatttaaattttttaaattaaattctctattttattttatgtgtgtg 419
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtttcactgtctgtatttaaattttttaaattaaattctctattttattttatgtgtgtg 620

                                                                 
Query: 420 ggtgttttgttatgcatgtacatctttatgcctcttgtaattttgatgcctgca 473
           |||||||||||||||||||||||||| ||||||||||||||  |||||||||||
Sbjct: 621 ggtgttttgttatgcatgtacatctt-atgcctcttgtaatcctgatgcctgca 673


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 913
Length adjustment: 10
Effective length of query: 502
Effective length of database: 903
Effective search space:   453306
Effective search space used:   453306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)