BAC Information

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BAC

Clone NameMSMg01-446C21
Chromosome7 (Build37)
Map Location 38,772,813 - 38,773,254
singlet/doubletsinglet
Overlap geneC80913
Upstream geneLOC100043874, Zfp536, LOC100043453, EG627844
Downstream geneCcne1, 1600014C10Rik, Plekhf1, Pop4, LOC668519, LOC100043464, 1700010N08Rik, EG627975, EG625594, EG627983, EG434171, LOC100043467
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446C21.T7 (MSMg01no446_c21.b1)MSMg01-446C21.TJ (MSMg01no446_c21.g1)
ACCAG534936AG534937
length761768
length of high quality
(start - end)
---442 (66 - 507)
definitionCHROMAT_FILE: MSMg01no446_c21.b1 PHD_FILE: MSMg01no446_c21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:38 2005CHROMAT_FILE: MSMg01no446_c21.g1 PHD_FILE: MSMg01no446_c21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAATCCGCGGAATTCCAGGCT
TCTCCCATAACAAGGGGTTATGAGTCAAACGCAACACTAGGGCGCGCACT
ATATCAGGAAATGCCTGAATCACTGCTACAGCACAGGACACAACATTCTG
TCTGGTTTTTTTTCCACATTGCCTCAAAAAAACAAACCTTCTTAAGACTC
GTGCTTTCCCAAATTCTAGTGTGACGAACCTATTCTATGATATCACAAAT
GTGAAATCTTCACATAATCGCGACCAAACCGGATGCCTAGACTGTCTAAG
TTGAACATAATTTTTTTTTTTGCTTTGCGCTGTTCTTGCAGTCATGCTGT
CCACCCCAGACATCAACGTCTCCAGAGCATGTGGAGTTGGAAGACAATCT
CTGCAGATAACCAGGGTTATCAGGCTGCTCACTGCTGCGGAAAGCAAGGG
CCCCAGCTGCAAGCTACTGACCCTCGCAGAATTTCCTGCTTGCTCCCCAC
TCCCAGCACATACTTGCCGCCTGTCTGTCTGTGTGCTCAACCATGGCAAG
CCATGCCTCAGCATTGAGTAAAACCCTGGCCCAACCTTAGCGTTTTCCTC
TGTCACAGCCGCCCTAAGTCTCCTGACCCTAATTCTTCCTTCCCACCTTT
TTACTTCCTGCTGTGAACCGTCCTTTACACCTCAAGGAAATTATATCTCT
CCCACTTTCCTGCCCCATCCTCTTCTTTTTTTTTTTCTGTTCACTTCTCT
CCCACAATTAN
GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXATCGTCACCACTCTAGAACTATCCCAGAAGCATCT
AAGAAAGCCTACTCTCAATTCAGTTCACTCCTCTGCAACAGGGCCCTGGG
CTATATCAGAGGCCATCACTCAAACCCAGCAGGCCTTTCTAAAATTCACA
ATCCATCTGCATTAAAGTTCCACTGCCCTGAAGAGTCCCTGGGCCACCTC
TAGAATTAAGAAAATAAAGAAAAGTTCAATTCAGGCATGGTACAAGCAGA
CAGATGATCACTGTTATCATAAGAAACGACAGCTTCCTTCAGTGTCCTGA
AGTCTAGGGAAGTTGCCATGAACACTGTTGAAGAAGGAACCACTGTTCTT
GCCAACTAGTGGGGAAAGGAATTCTCCTCGTGCACAACTGGAACACATCT
GTACGAAATCGGAGGCCTTGGGACCTTTTCTTCCTAAATGGCCACGGCAA
AATGCTTAGTGACATCACTTAAATAATTAACATCTACCCAAAAAAATTAA
GGCAAAATGGAGACGTATTCCTTTTTATAACTGCATCATACCCAAGAAAT
AGCCTCCTCCGAATATGTTGGCGACCAAACACATGAACCTAAGGGTTCCT
GATTTCCGGGATCCCCCCAAAAAATTTATTATCTTAAAAAATAACCCAAA
AATTTTTCAAAAAATATTTTAACAAGTTGTTTAGAAGGGGGAACCCCTAC
CCTTCCCTAAAATCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_c21.g1 MSMg01no446_c21.g1 CHROMAT_FILE:
MSMg01no446_c21.g1 PHD_FILE: MSMg01no446_c21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:38 2005
         (442 letters)



>mm_chr7_38772613_38773454
          Length = 842

 Score =  839 bits (434), Expect = 0.0
 Identities = 440/442 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcgtcaccactctagaactatcccagaagcatctaagaaagcctactctcaattcagtt 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 atcgtcaccactctagaactatcccagaagcctctaagaaagcctactctcaattcagtt 260

                                                                       
Query: 61  cactcctctgcaacagggccctgggctatatcagaggccatcactcaaacccagcaggcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cactcctctgcaacagggccctgggctatatcagaggccatcactcaaacccagcaggcc 320

                                                                       
Query: 121 tttctaaaattcacaatccatctgcattaaagttccactgccctgaagagtccctgggcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttctaaaattcacaatccatctgcattaaagttccactgccctgaagagtccctgggcc 380

                                                                       
Query: 181 acctctagaattaagaaaataaagaaaagttcaattcaggcatggtacaagcagacagat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acctctagaattaagaaaataaagaaaagttcaattcaggcatggtacaagcagacagat 440

                                                                       
Query: 241 gatcactgttatcataagaaacgacagcttccttcagtgtcctgaagtctagggaagttg 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatcactgctatcataagaaacgacagcttccttcagtgtcctgaagtctagggaagttg 500

                                                                       
Query: 301 ccatgaacactgttgaagaaggaaccactgttcttgccaactagtggggaaaggaattct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccatgaacactgttgaagaaggaaccactgttcttgccaactagtggggaaaggaattct 560

                                                                       
Query: 361 cctcgtgcacaactggaacacatctgtacgaaatcggaggccttgggaccttttcttcct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cctcgtgcacaactggaacacatctgtacgaaatcggaggccttgggaccttttcttcct 620

                                 
Query: 421 aaatggccacggcaaaatgctt 442
           ||||||||||||||||||||||
Sbjct: 621 aaatggccacggcaaaatgctt 642


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 842
Length adjustment: 9
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)