BAC Information

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BAC

Clone NameMSMg01-446I24
Chromosome7 (Build37)
Map Location 114,869,693 - 114,869,908
singlet/doubletsinglet
Overlap genePpfibp2
Upstream geneOlfr696-ps1, Olfr697, Olfr698, Olfr699, Olfr700, Olfr701, Olfr702, Olfr703, Olfr704, Olfr705, Olfr706, Olfr707, Olfr708, Olfr709-ps1, Olfr710, LOC384651, Olfr6, Olfr711, GA_x5J8B7W6B6J-1784824-1783474, Olfr2, Olfr713, Olfr714, Olfr17, Olfr715, Olfr716, Nlrp14, LOC100042278, 1700012H05Rik, Syt9, Olfml1, 5330417H12Rik
Downstream geneCyb5r2, Ovch2, LOC100042310, Olfr467, Olfr468-ps1, Olfr469, GA_x5J8B7W6B6J-2580381-2580079, Olfr470, Olfr471, LOC626661, Olfr472, Olfr473, LOC669301, Olfr474, Olfr476, Olfr477, LOC626732, Olfr478, Olfr479, Olfr480, Olfr481, LOC100043059, Olfr482, Olfr483, Olfr484, Olfr485, Olfr486, Olfr487, Olfr1538-ps1, Olfr488, LOC546990, Olfr489-ps1, Olfr490, LOC626881, Olfr491, Olfr492, Olfr493, Olfr494, Olfr495, Olfr496-ps1, Olfr497, Olfr498, Olfr499-ps1, Olfr500-ps1, Olfr501-ps1, Olfr502, LOC269980, Olfr503, Olfr504, Olfr505-ps1, Olfr506, Olfr507, Olfr508, Olfr509, Olfr510, Olfr511-ps1, Olfr512
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446I24.T7 (MSMg01no446_i24.b1)MSMg01-446I24.TJ (MSMg01no446_i24.g1)
ACCAG535227AG535228
length735733
length of high quality
(start - end)
441 (63 - 503)220 (359 - 578)
definitionCHROMAT_FILE: MSMg01no446_i24.b1 PHD_FILE: MSMg01no446_i24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:07 2005CHROMAT_FILE: MSMg01no446_i24.g1 PHD_FILE: MSMg01no446_i24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCCGCTATACGACTCCTATAGGCAGAGAAGCGCGGAATTCTTATGTTGTT
TCACAGACCCCAAAATGATAGCACTCGGGTATTTTAAGGGTCAACTAGGT
AGGCCCACCCTGAGTGGATTAACATCTTTATGAAATAGGAAAAGAGCGTA
TTATGGTGGCATATACCTTTAAACCTAGCGCTCAGGAGGCTCTGTAAGTT
CAAAACCAGCCTGGTCTACATGTAAAACCTTGTCTTAAAATATACATATA
TATATCCATAGAATCGTAAGCGAAGACAGAGCGTGCTGCCCACCACGAGG
GTGCATTATTTTTTTTGCTGTCTATGAACCACGAAGGGAACCCTTACTAG
TCACTGAATGCAGTGGCACCTTAATCTCCCAGCTTCCAGAACCATGAGAA
ATAAATGCTTGTGTTAAGAGTCTACAGTGTTTCCTGCAGCAAAACTAAAA
CAGCCGGCAACTCACAGCAAAGGGACTCTGCAGACAGGGTTGATAAAGGA
ATGCCTGGCACAGATCCGAAAAAGATGAGTGTGTTGAATTCAGAATGCTG
CTGTAGTTTGAGCTGCTGTGATAGTGGACATGCCTACAGGCTCAGTACTT
TGGAAGCATAAGCAGGAGTTCCAAGTCGCAGGTTCTGGGGGCTGAGCCCA
TGTTTTCTTGCCCGCGTGGCCAACACTACCTGACCGAGTTACTTTCCTTA
TCTCCTGTGAATTGTCTCAAAGATTTAATTTATCA
GAGGCCTGGNGGCGCCTGGCTTTCCCACCAGGNGAACNATAGAAGGATTG
CGATATACCGTTTGCTTCCATGTTCTAGGAGCTGTTTGACATTCAGCTCA
TTCTTTCACTACACATTGACAAGAGCCTCCACATATGAACTTAGAAATGA
GAAATCAGAAGAGAAATGAGAGTGTTAAAGAAATCTGATACATAGTAGAC
ATGCCAGAATATCCAGAGATGAAGATCATGACATCTTCTTTTTTGTGATG
ACCCACAGAGCAGAGAGGTCAGACATGATCAGGCATGTGAACCAGCCCAG
CAGCTTCTAGTGCTTTCTCGNCCACTGGCAGNTGCTTCACACTCACTTTT
GCACTATGAAAACATCCCCATCTCATGGGCTCCTCCCGGGCCCTGTAAAT
CAGCCCCTCTGAAAATGAACTCACTTCATGTATTTTTAACAAGCGTCTTG
GATTATTCTAATACTCAGTCAGACTCAGACCATGGGAAAAAGAGTAGTCA
GAACAGTTAATAGATTTGTAGGCTAGAGAGATTGCTCTGCAGATAAAGGC
ACTAGCTACCCAAGCCTAATGACCCAAGTTCAATTCCTGGAACCCACTAA
AAAGCTGCCATGGGCTGAACTCAGTCGGAGTCCCTCAACCCATTTTTTTT
TTTTATTTCTGGCACTCCGGTGGGCAAGGAATCCAGCGAGGGACAAACCT
TCTTGTAGATACACTAGAGTACTGGATTTTGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_i24.g1 MSMg01no446_i24.g1 CHROMAT_FILE:
MSMg01no446_i24.g1 PHD_FILE: MSMg01no446_i24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:08 2005
         (220 letters)



>mm_chr7_114869380_114869998
          Length = 619

 Score =  364 bits (188), Expect = e-105
 Identities = 211/220 (95%), Gaps = 4/220 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaacatccccatctcatgggctcctcccgggccctgtaaatcagcccctctgaaaatga 60
           ||||||   ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 529 aaaaca---ccatctcatgggctcctcccgggccctgtgaatcagcccctctgaaaatga 473

                                                                       
Query: 61  actcacttcatgtatttttaacaagcgtcttggattattctaatactcagtcagactcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 actcacttcatgtatttttaacaagcgtcttggattattctaatactcagtcagactcag 413

                                                                       
Query: 121 accatgggaaaaagagtagtcagaacagttaatagatttgtaggctagagagattgctct 180
           |||||||| ||||||||||||| |||||||||||||||||| ||||||||||||  ||||
Sbjct: 412 accatggg-aaaagagtagtcaaaacagttaatagatttgtgggctagagagatcactct 354

                                                   
Query: 181 gcagataaaggcactagctacccaagcctaatgacccaag 220
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 gcagataaaggcactagctacccaagcctaatgacccaag 314


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 220
Length of database: 619
Length adjustment: 9
Effective length of query: 211
Effective length of database: 610
Effective search space:   128710
Effective search space used:   128710
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)