BAC Information

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BAC

Clone NameMSMg01-446N05
Chromosome7 (Build37)
Map Location 79,419,842 - 79,420,087
singlet/doubletsinglet
Overlap geneMctp2
Upstream geneLOC665535, LOC100042873
Downstream geneLOC100042880, LOC233391, LOC665570, LOC100042029, EG384643, LOC625243
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446N05.T7 (MSMg01no446_n05.b1)MSMg01-446N05.TJ (MSMg01no446_n05.g1)
ACCAG535428AG535429
length741759
length of high quality
(start - end)
250 (65 - 314)434 (70 - 503)
definitionCHROMAT_FILE: MSMg01no446_n05.b1 PHD_FILE: MSMg01no446_n05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:28 2005CHROMAT_FILE: MSMg01no446_n05.g1 PHD_FILE: MSMg01no446_n05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATGCCGCGGAATTCAT
ATATTTTACATACTGACTAACCCTTCTGCAGAGGAAGACACATAAACTTT
CTCTGACCCTCAGATCAAATGCCAGGCAACTGGCTGCTCACCAAAATATA
CTCTATACTTTCTTTGCCAAAAGACTGGCCTCTGAACTTCACTGCCTCTT
GTGTGCCCAACCTACCCAGCAGCAGGCTAAGGGTCTGTTCTCTATCTTGA
TAATCACCCATCTTCGCTTCTACCACACATAGTGATCTTCTCACTTCCCT
GCCATCATCGCATAACTCGTACTTTTCAGATAGGCTGACAACCCTCCAAG
GTCTTCTCTCCACTTGGACTAAGTGCAGAAATGTATCCATCCTCTTTCTC
AGAGATGCCTTAACAGAATCTCAGAGCATGAGTACACATTGATTTCATTG
AAACATTGAGGAGCGTTTACTGTTGCTAAACTTTAATATGAAGACTGACT
CGTCCATTTAGTACTATTCAGCCAGCCTAGAGTTGTGTCAAGAACTTGGC
CACTGTTCTGAAAATAAAACAGGAAGGAACTGGTAAACAGGGAGTGTAGA
AAGTCTGTCTCACAGAGGACAAAATAGACGAGTAGCTTTATAAAACATCT
TTTTAATTTTAAGCACATTTCCCGCAATTCACCCAGTGCGAAACCCCCAT
GAACAAATTACCTTGACACGAAATGAAAAAAAAAGTGTTCT
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTGATCTTTCCAACACTTTTATCATGAATGG
GTGTTGGATCTTGTCAAATGCCTTTTCTGCATCTAACGAGATGATCATGT
GGTTTTTGTCTTTGAGTTTGTTTATATACTGGATTACATTGATGGATTTC
CGTATATTGAACCATCCCTGCATCCCTGGGATGAAACCTACTTGGTCAGG
ATGGATGATTGTTTTGATGTGTTCTTGGATTCGGTTAGCAAGAACTTTAT
TGAGGATTTTTGCATCTTTATTCATAAGGGAAATTGGTCTGAAGTTCTCT
ATCTTTGTTGGGTCTTTTTGTGGTTTAGGTATCAGAGTAATAGTGGCTTC
ATAAAATGAGTTGGGTAGAGTACCTTCTACTTCTATCTTGTGGAATAGTT
TGTGAAGGACTGGAATTATATCTTCTTTGAAGGTCTGATAGAACTCTGCA
CTAAACCTGTCTGGTCCTGGTTTTTTTTTATCTGGGAGACTATTAAAAAC
CCGCTTCTATTTTTTTTATGTGATATGTGACTCGTTTTAATGGTCCAACT
TGATCCTGGACTCTCTTTTGGTACCCGGTTTTTTGTCCCCAAATTTTTCC
TTTTCCTTCCTTCTTTTTTCCACCTTTTTTTTACTATTACCCCTCTTTCA
TACTTCATCTTTACATTTCTTTTTCCTTTTCCCCTCCCACTCTTTTTTTT
ATTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_n05.b1 MSMg01no446_n05.b1 CHROMAT_FILE:
MSMg01no446_n05.b1 PHD_FILE: MSMg01no446_n05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:28 2005
         (250 letters)



>mm_chr7_79419642_79420289
          Length = 648

 Score =  429 bits (222), Expect = e-125
 Identities = 241/248 (97%), Gaps = 2/248 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gactaacccttctgcagaggaagacacataaactttctctgaccctcagatcaaatgcca 60
           |||||||||||||||||||||||| |||  ||||||||||||||||||||||||||||||
Sbjct: 201 gactaacccttctgcagaggaagaaaca--aactttctctgaccctcagatcaaatgcca 258

                                                                       
Query: 61  ggcaactggctgctcaccaaaatatactctatactttctttgccaaaagactggcctctg 120
           |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 259 ggcaactggctgctcaccaaaatatactctataccttctttgccaaaagactggcctcag 318

                                                                       
Query: 121 aacttcactgcctcttgtgtgcccaacctacccagcagcaggctaagggtctgttctcta 180
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 319 aacttcactgcctcttgtgtgcccaccctacccagcagcaggctaagggtctgttctcta 378

                                                                       
Query: 181 tcttgataatcacccatcttcgcttctaccacacatagtgatcttctcacttccctgcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 379 tcttgataatcacccatcttcgcttctaccacacatagtgatcttctcacttccctgccg 438

                   
Query: 241 tcatcgca 248
           ||||||||
Sbjct: 439 tcatcgca 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 648
Length adjustment: 9
Effective length of query: 241
Effective length of database: 639
Effective search space:   153999
Effective search space used:   153999
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)