BAC Information

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BAC

Clone NameMSMg01-446N10
Chromosome7 (Build37)
Map Location 144,556,370 - 144,556,809
singlet/doubletsinglet
Overlap gene9430038I01Rik
Upstream geneLOC546009, EG621677, EG668771, Mgmt, EG621804, Ebf3
Downstream geneTxnl2, LOC435235, Tcerg1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446N10.T7 (MSMg01no446_n10.b1)MSMg01-446N10.TJ (MSMg01no446_n10.g1)
ACCAG535438AG535439
length732735
length of high quality
(start - end)
527 (63 - 589)451 (86 - 536)
definitionCHROMAT_FILE: MSMg01no446_n10.b1 PHD_FILE: MSMg01no446_n10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:29 2005CHROMAT_FILE: MSMg01no446_n10.g1 PHD_FILE: MSMg01no446_n10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCC
TGGATTTTCAGACAATTGTGAGTCAGGTGGCATAGGTTCGGGGAACTGAA
CACATGCACTCTGCAAGAGCAATAGATGCTCGTAACCAATAAACCATCTC
TCCAGGCCATGGTTTTTGTTTGTTTGTTTTGTTTTGAAACAATGTCTTTC
TACGTAACCCTGGTTGGCTTGAACTCTCTATGCAGACCAAGCTGGCCTGG
AACTCACAGAGATCTGCCTGTCTCTGCATCCCAAATGCTGGAATTAAAGG
TGTATACACCAACTATATCCAGCCCTGTTTTGTTTTGTTTTAAAGATTTA
TTTATTTTTATTTATACAAGTACACTGCAGCTGTTTTTAGACACACACCA
GAAAAATGCATTGGACTCCATTACAGATGGTTGTGAGCTACCATCTGGTT
GCTGGGAATTGAACTCAGTTCCTCTATAAGAGCAGTCAGTGCTCTTAACT
GCTGAGCCATATCTCCAGGCCCGTTTTGTTTTTAAGACAGTTTCTAGTAG
CCCAGACTAACCTCCACCTCACTATGATGATGACTTTTGAAATTCTGATC
CTCCTTCCTCCATCTACCTTCCTGTTTTTAAGACCCTGCTTGGTTCCCCT
ATACTATCCCATTAATACCCTACGGAATCACTCTTATATCCAGACTCTCT
GCCTAGTCTTCTAAAATCTTCAATTGAACCTN
CCCCAATTNNTCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGGCTTCTAAAAA
TCCAATTTGGCTCTGAACGGAAGGACACATCCTTGCTGCCAGACAGACCG
CAGGGTCCTAAAGCAGACAAGCAGGTCAGATCTAGCCCTTCTGCCAACAA
ATCTGCCTCAAAAATCACATGCTCTCCTGGAGGCTGTGTCTTGGTCAGCT
TCACATTCCAGGGATGGCTTGTATGTGCAAATGTGGCCAACAGAAGTGCC
TTAGCGGTCCTCAGCAAGCGAGATCAATGTTTATAAGTGCTTACAATGGA
TGCCTCATGACCCGAGTTCAATCCCCAGATCCCACATAGAGAGAAAGAAA
GAACTGACTCCACAAAGTTGTTCTCTGATCTCAACACACTCGCTGTGGCA
CACACACATCCACGCACAGGCATATCACTCACATGCGCGCGCGCACACAC
ACACACACACACACACTTTTTTTTTTATAAAGAAATGCCTTAGTGATATG
TACCAGCATGTAGAGGTGGAACGAGCAAGGGCTTTGTGTCCCACAAATAA
TTGACTCTCTGGCAGCTCATGCAAACCTGATTTCCCAATTAAAATCACCC
CGAAAGTGTCGTGTGTTCCTTCACGACCAACCCACCAATGGTTTGGGCTT
CCGTACCCAACTTTGCCCCTCCCTCCCCCTTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_n10.g1 MSMg01no446_n10.g1 CHROMAT_FILE:
MSMg01no446_n10.g1 PHD_FILE: MSMg01no446_n10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:29 2005
         (451 letters)



>mm_chr7_144556170_144557020
          Length = 851

 Score =  748 bits (387), Expect = 0.0
 Identities = 431/455 (94%), Gaps = 19/455 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttggcttctaaaaatccaatttggctctgaacggaaggacacatccttgctgccagaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttggcttctaaaaatccaatttggctctgaacggaaggacacatccttgctgccagaca 260

                                                                       
Query: 61  gaccgcagggtcctaaagcagacaagcaggtcagatctagcccttctgccaacaaatctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaccgcagggtcctaaagcagacaagcaggtcagatctagcccttctgccaacaaatctg 320

                                                                       
Query: 121 cctcaaaaatcacatgctctcctggaggctgtgtcttggtcagcttcacattccagggat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 cctcaaaaatcacatgctctcctggaggctgtgtcttggtcagcttcacattccaggaat 380

                                                                       
Query: 181 ggcttgtatgtgcaaatgtggccaacagaagtgccttagcggtcctcagcaagcgagatc 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggcttgtacgtgcaaatgtggccaacagaagtgccttagcggtcctcagcaagcgagatc 440

                                                                       
Query: 241 aatgtttataa-gtgcttacaatggatgcctcatgacccgagttcaatccccagatccca 299
           ||||  || || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatgggta-aacgtgcttacaatggatgcctcatgacccgagttcaatccccagatccca 499

                                                                       
Query: 300 catagagagaaagaaagaactgactccacaaagttgttctctgatctcaacacactcgct 359
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 500 catagagagaaagaaagaactgactccacaaagttgtcctctgatctcaacacactcgct 559

                                                                       
Query: 360 gtggcacacacacatccacgcacaggcatatcactcaca--tgcgcgcgcgcacacacac 417
           |||||||||||||||||||||||||||||||||||||||  |||              ||
Sbjct: 560 gtggcacacacacatccacgcacaggcatatcactcacacatgc--------------ac 605

                                              
Query: 418 acacacacacacactttttttttta-taaagaaat 451
           ||||||||||||||||||||||||| |||||||||
Sbjct: 606 acacacacacacacttttttttttaataaagaaat 640


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 851
Length adjustment: 10
Effective length of query: 441
Effective length of database: 841
Effective search space:   370881
Effective search space used:   370881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)