BAC Information

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BAC

Clone NameMSMg01-446O13
Chromosome7 (Build37)
Map Location 148,159,531 - 148,159,775
singlet/doubletsinglet
Overlap genenone
Upstream gene6430531B16Rik, Adam8, Tubgcp2, Zfp511, Msx3, Drd1ip, Prap1, 1810014F10Rik, Echs1, Paox, Mtg1, Sprn, Olfr522, Olfr523, Olfr524, E430002D04Rik, 5830411N06Rik, EG622335, Olfr525, Olfr527, GA_x5J8B7W72BC-152913-152037, Olfr60, GA_x5J8B7W72BC-125691-125311, Olfr530, LOC622973, Olfr531, Olfr532, Olfr533, Olfr534-ps1, Olfr535, Olfr536, Olfr537-ps1, Olfr1523-ps1, Olfr538, Olfr1553-ps1, Olfr46, Olfr61, Olfr53, Olfr539, GA_x5J8B7W3EKE-4574231-4574913, Olfr45, Olfr541, GA_x5J8B7W3EKE-4522784-4521912, Cyp2e1, Syce1, LOC100043529, BC066028, 1190003J15Rik, Scgb1c1, Odf3, Bet1l, Ric8, Sirt3, Psmd13, LOC100043546, Cox8b, Nlrp6, Athl1, Ifitm5, Ifitm2, Ifitm1
Downstream geneLOC665143, Ifitm3, Ifitm6, B4galnt4, Pkp3, Sigirr, Trp53i5, Ptdss2, Rnh1, LOC546015, Hras1, Lrrc56, 1600016N20Rik, Rassf7, AA673488, Irf7, Mucdhl, Sct, Drd4, Deaf1, Tmem80, Eps8l2, B230206H07Rik, Taldo1, LOC100043585, Pddc1, Cend1, Slc25a22, Lrdd, Rplp2, Pnpla2, Efcab4a, Cd151, Polr2l, Tspan4, Chid1, Ap2a2, Muc6, LOC100039649, Muc2, Muc5ac, Muc5b, Tollip, EG623757, Brsk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446O13.T7 (MSMg01no446_o13.b1)MSMg01-446O13.TJ (MSMg01no446_o13.g1)
ACCAG535491AG535492
length733756
length of high quality
(start - end)		170 (361 - 530)245 (62 - 306)
definitionCHROMAT_FILE: MSMg01no446_o13.b1 PHD_FILE: MSMg01no446_o13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:34 2005CHROMAT_FILE: MSMg01no446_o13.g1 PHD_FILE: MSMg01no446_o13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCCGCGGAATTCTGTTACT
TAACATATACCTCATTAGTGGTGAGATCTTTCCTCTTTGTAATTATCTCA
GCTCTAAATTTACATCAATCAATAAAGCAAAGCAAAGCAGCCAAGACTAT
TCAGTTCTTTAAACCAAGCCATTGGGTAACTATCACGGACAAAGGTTAGC
TAGCTCCCCCTACAGGCCTAAACTCAGACTAGCCCTGCCCCTTGATGACT
GCAGCCTTCAAGAGAGCTGGCCATGCACCACCACTAGGCAGCATAGTAGA
GCTGGTTTTGGTGGTATAGGNGACAGCTGGCCCAAATGGNATAAGCATGT
TATAGCTGGCCCCATCCCTTGCCTGGGCAAAGCAGGAGACCTAGTGGCAC
AGGAGAGCTGGCAGGTTGAAGAACTAACTCAGCTACCACCCAGGCCCAGA
TCCAGGGCTTTGAGTTAGCCTACCCCAGTGCCTTCCCCATGATCATGAGA
AAGGTGTGGTCCTGCAGAACCAACACTGCAGGATCCCATGTCACAGGGCA
ACAACAGACTATCCCAGAGGAGTCCTGGCGCAGATCCAGTAATGATGTTG
CAGCACAAGCCAGAGGCTCCAAACCATAAAGCTGCCCGGTTATTTTTTTT
TTTTTGTTCACCATCACGTGACACTGCAGCTTCCCCGGTTATGCGCTGCT
TTGGTCATTTCTCGATTTCCCTTCTCTTTCTTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCCACTGAATTCCTGTGTTTGCAGGCGTGGTTGGGTTTTG
TCCCGGCCTTTCAGTTAGTTTGTTACTGTGTCATTAGGCTTTGTTTCCTA
AATGTGTCTCAGCTAGCTGTTATACAATGCTATAGCTTCTGAAGAGAAGC
CATGCGTGCTCTCCCAGTGGGGAACAGGTGGGGGTGGGTCACCTCGGCTG
GGTGAGAAGAGCCAGCTTTCTCTCTACTTCTGCTGAGGGTGACTCAGAAG
ATGAGCCTTATTCTTACAGTCCTTGCCAGCCTCTGCTTACTCACGTTTAT
TGAGTCTCTTTTAGCACTGAGGGCCCTGAGCTACAGCAGGGTAAAGAGCC
GCAGAGCAGCCTTAGTTGGTAGTCTGGTGAGGACAGTGGAGGGACTGATG
GCGGCAGACGCGTGCACTAGAGATGCTTGCCACCCAATTTGCTCTGTGGC
TGTTTGCTTTGTCTAGCTTTGGGTCCCTTGTCACGCCATTTTCTGATAAT
GACGGACACCCCCTTGGTTGCCTTTTTGCCCTTTTTTCCCTGCCCCATGA
TCTATTTCCTGGGGCTACCTCTCCCCTTCTCCCCAAATAATGACGCCTTT
TTTCTTTTCCCTACTCAGGAATATGGCTTTTCCCCTTATCTATTCCTCCT
TTCTTCTCCCTCTTCCTTTTTCCACCCTGTTCCCCTCTTTCTAGTTTCTC
TCATCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_o13.g1 MSMg01no446_o13.g1 CHROMAT_FILE:
MSMg01no446_o13.g1 PHD_FILE: MSMg01no446_o13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:34 2005
         (245 letters)



>mm_chr7_148159331_148159975
          Length = 645

 Score =  451 bits (233), Expect = e-131
 Identities = 242/245 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccactgaattcctgtgtttgcaggcgtggttgggttttgtcccggcctttcagttagttt 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 445 ccactgaattcctgtgtttgcaggcatggttgggttttgtcccggcctttcagttagttt 386

                                                                       
Query: 61  gttactgtgtcattaggctttgtttcctaaatgtgtctcagctagctgttatacaatgct 120
           ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 385 gttactgtgtcgttaggctttgtttcctaaatgtgtctcagctagctattatacaatgct 326

                                                                       
Query: 121 atagcttctgaagagaagccatgcgtgctctcccagtggggaacaggtgggggtgggtca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atagcttctgaagagaagccatgcgtgctctcccagtggggaacaggtgggggtgggtca 266

                                                                       
Query: 181 cctcggctgggtgagaagagccagctttctctctacttctgctgagggtgactcagaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cctcggctgggtgagaagagccagctttctctctacttctgctgagggtgactcagaaga 206

                
Query: 241 tgagc 245
           |||||
Sbjct: 205 tgagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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