Query= MSMg01no446_p15.b1 MSMg01no446_p15.b1 CHROMAT_FILE:
MSMg01no446_p15.b1 PHD_FILE: MSMg01no446_p15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:39 2005
(450 letters)
>mm_chr7_116111582_116112430
Length = 849
Score = 785 bits (406), Expect = 0.0
Identities = 430/440 (97%), Gaps = 6/440 (1%)
Strand = Plus / Minus
Query: 10 ctcactgggtcctgattatttttcagagatggtatgaaaatattattttgatgtatgagg 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 ctcactgggtcctgattatttttcagagatggtatgaaaatattattttgatgtatgagg 790
Query: 70 ttttttttgagtcagtgtctcactatctagcatggcctaacttggaactcactgtatgtg 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 -tttttttgagtcagtgtctcactatctagcatggcctaacttggaactcactgtatgta 731
Query: 130 ccaggttggccttgaacttgtggcaatcctcttgcatcagcccttgggtgccgtgatgac 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 ccaggttggccttgaacttgtggcaatcctcttgcatcagcccttgggtgccgtgatgac 671
Query: 190 agatatttgagttaccacacctgatttaattaatgggctttctagagactcctttaatta 249
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 670 agatatttgagttaccacacctggtttaattaatgggctttctagagactcctttaatta 611
Query: 250 ttctttat--tagacaaatgcctctcttacttcatctttctggggcctgaaggagtggga 307
| | || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 tgc---atgagagacaaatgcctctcttacttcatctttctggggcctgaaggagtggga 554
Query: 308 cagttttgaaaatatatcaggtgacaaagtaccaccagtccatgagctacctatcatctg 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 cagttttgaaaatatatcaggtgacaaagtaccaccagtccatgagctacctatcatctg 494
Query: 368 ccaagtgcacagattcatctcagttctgagtgtatggcatgtagattcacatgtctctgt 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 ccaagtgcacagattcatctcagttctgagtgtatggcatgtagattcacatgtctctgt 434
Query: 428 gatataaagagaggttctgg 447
||||||||||||||||||||
Sbjct: 433 gatataaagagaggttctgg 414
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 849
Length adjustment: 10
Effective length of query: 440
Effective length of database: 839
Effective search space: 369160
Effective search space used: 369160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no446_p15.g1 MSMg01no446_p15.g1 CHROMAT_FILE:
MSMg01no446_p15.g1 PHD_FILE: MSMg01no446_p15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:39 2005
(573 letters)
>mm_chr7_115941271_115942243
Length = 973
Score = 971 bits (502), Expect = 0.0
Identities = 557/577 (96%), Gaps = 8/577 (1%)
Strand = Plus / Plus
Query: 1 aaaccacaattctcaagcatgctagcctcaaaactctgttacattcttatcatttctaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 aaaccacaattctcaagcatgctagcctcaaaactctgttacattcttatcatttctaag 258
Query: 61 gaacccagagaaactttttatgcaggttataataattaataaatgttacatttattaatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gaacccagagaaactttttatgcaggttataataattaataaatgttacatttattaatt 318
Query: 121 tattaagtttctacattaagaatttaaatcagtacctaatactgtaacgtgattatttgt 180
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 319 tattaagtttctacattaagaatttaaatcagtacctaatattgtaacatgattatttgt 378
Query: 181 taaaag-aataaatattttagtgaaattttgttatatttttttaaagcttagaagagtgt 239
|||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 379 taaaagtaataaacattttagtgaaattttgttatatttttt-aaagcttagaagagtgt 437
Query: 240 gattggct-anatttctatggatttctttaatatctggtttagtat-taactaaattctc 297
||||| || | |||||| | ||||||||||||||||||||||||| |||||||||||||
Sbjct: 438 gattgtcttatatttctgtagatttctttaatatctggtttagtacataactaaattctc 497
Query: 298 atctccacttctgacataagggatcatgtagtttctggaaaaaaatctactctacattcc 357
||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct: 498 atctccacttctgacataagggatcatgtagtttctggaaaaa--tctactatacattcc 555
Query: 358 tgaaagaatgtaatacataaagcaaataatatgaaaggaatactgatattatggaacccc 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tgaaagaatgtaatacataaagcaaataatatgaaaggaatactgatattatggaacccc 615
Query: 418 aaaagaaactcagggtctccaatggaacccc--aaaccaactttgagaacaactactcaa 475
||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 616 aaaagaaactcagggtctccaatgggaccccccaaaccaactttgagaacaactactcaa 675
Query: 476 aacacaacaatgaggaaccattaaataacaaataacttaatctgaataaattaagaaaca 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 aacacaacaatgaggaaccattaaataacaaataacttaatctgaataaattaagaaaca 735
Query: 536 gaccaagagaacggctttcaaatattaaaatgagagg 572
||| ||||||| |||||||||||||||||||||||||
Sbjct: 736 gacaaagagaatggctttcaaatattaaaatgagagg 772
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space: 542169
Effective search space used: 542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
