BAC Information

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BAC

Clone NameMSMg01-447D20
Chromosome7 (Build37)
Map Location 110,110,175 - 110,110,600
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667222, Numa1, Il18bp, Rnf121, Trpc2, Art5, Art1, Chrna10, Nup98, Frag1, Rhog, Stim1, Rrm1, Olfr543, Olfr544, Olfr545, LOC667284, Olfr547, Olfr548-ps1, Olfr549, Trim21, LOC384699, Olfr550, Olfr551, Olfr552, Olfr553, Olfr554, LOC100040840, Olfr555, Olfr556, Trim68, Olfr557, Olfr558, Olfr33, Olfr559, Olfr78, Olfr560, Olfr561, Olfr562-ps1, Olfr563-ps1, Olfr564, Olfr565-ps1, Olfr566, GA_x5J8B7W5P47-379997-380552, Olfr567-ps1, Olfr568, Olfr569, Olfr570, Olfr571, Olfr572, Olfr573-ps1, Olfr574, Olfr575
Downstream geneOlfr576, Olfr577, Olfr578, Olfr1527-ps1, Olfr579-ps1, Olfr580-ps1, Olfr581-ps1, Olfr582, Olfr583, Olfr584, Olfr585, Olfr586, Olfr587-ps1, Olfr588-ps1, Olfr589, Olfr590-ps1, Olfr591, Olfr592, Olfr593, Olfr594, Olfr595-ps1, Usp17, Dub2a, LOC100041187, Olfr597, GA_x5J8B7TU1BB-380-666, Olfr598, Olfr599, Olfr600, Olfr601, Olfr602-ps1, Olfr604, Olfr596-ps1, Dub2, Olfr605, Olfr606, EG546989, Olfr608, Olfr609, Olfr610, Olfr611, EG545985, Olfr614, Olfr615, Olfr616, LOC100042167, Olfr617, Olfr618, Olfr619, Olfr620, LOC667639, Olfr622, Olfr623, Olfr624, Olfr625-ps1, Olfr261-ps1, Olfr260-ps1, Olfr627, Olfr1526-ps1, Olfr629, Olfr630, Olfr69, Olfr68, Olfr67, Hbb-b1, EG436003, Hbb-bh1, Hbb-y, Olfr66, Olfr64, Olfr65, Olfr631, Olfr632, Olfr633, Olfr634-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-447D20.T7 (MSMg01no447_d20.b1)MSMg01-447D20.TJ (MSMg01no447_d20.g1)
ACCAG535744AG535745
length1,209768
length of high quality
(start - end)		---426 (79 - 504)
definitionCHROMAT_FILE: MSMg01no447_d20.b1 PHD_FILE: MSMg01no447_d20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:16:04 2005CHROMAT_FILE: MSMg01no447_d20.g1 PHD_FILE: MSMg01no447_d20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:16:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATAAACTCAATTATATTGCTGGGCCGCTGAATAGCGACGTCATCTATTAT
TACTACGAGGATGCGCGCGGGGAATGTCTNTCTGTCTTATGTCCCTCGAG
ACCGACATGTTATGTTAAGTGGGAGGTGTATCTTCGTATTCTTCCGTGCA
CGGCCCATCGCTCTTGTTTAGCTTTCTCCTTATAACAGTATCGCAATGTC
GTGATCGCGTATTACTCACCTAACATTAGATACATATTACTTACTCGTAT
CTAGCAGACATTCTCATCCATCACCACCTGCTATGCTGCTGACNTACTAC
TCGCTCATACATTACTCTATTCTATATTAGTTATTATAATATTCAATTCT
TGAGTTTCATCCTAACTCTACGATTTTTACTGACATTATATAGCCATATA
GATAAATATCTATTATACCACAACATTACGGAAGCACTCAATACTATACG
ACGACCACAATACCATTAGCGATCGCATACGCGTTGTCTCTCGTTTTATA
TATGTTCCCAGATAATACCGCCGACAGTGATCTACAACCGACAGACCGAA
TCTGTGAGCTTATCGTCATGGTGCTATCGAAGAGCAGACGACGATCATCA
TTTACGTAAATACTGTGTTTGACTGTACCTCCATATTATATAGCTGTCGT
ACCTGTTTATCCCACACTGTTGGTTGTTTTACATGTCTACTGATTGTGTC
TGAGTACTGATTCTTATCTTTCTCCCCTATTACGTATCGACATGCGCACG
AGGATTACTTATTTTCTTACTGTTTCGCGCTAGTACCCGTTTCTTCGCTA
CCCATATCGACAATGTGTTAGCCTAAGAATCGACATCGAGTTTGTATCGC
GTTCTCCTCTATACCCAGTCACATCGTTTATATCGCATCATTCGCTATAA
AGCCTAAGCCCTTATCACATATTGTTGCTTGTGTATCCATCCATATGTCG
ATAGACGATCCCCCGCGCGGTGCTATCGCCTTTGTCTCGCCGATTCTTAT
CATATATCTTCTCCACTTCCAACTTATTCTTCCATCTGTTTCTTCGATTA
TCCTATCTCTATGGAGGCGTCACCCGCGTTTCGGCCGCGATAGCAGCGCG
AGCGCTAAACTACATTCCGTCGCTCCCCCCAGTAGTCGTCTCTACTGGTT
CATCACGGACCAGCCTGCTGATTATGCATGTATGCTCGCACCTCTGCAGT
AGCACCACN

NCCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCTGTAGACCAGGCTGGCCT
TGAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGG
CATGCACCACCACGCCTGGCGATTTTTTTTTCTTTATTGGATATTTTCTT
GGAAGTAGAATTGTTGAGAAGAGAAAGATCAGTGGGAATGGAAGGGTGAC
AAGAGAAAGTAGTTGCATGGGTGACTAGGATAAAAATACATTATATGTAT
GGATGAAGTGTCATAATAAAACTCGTGCCATTAATATGCACTAATAAAAA
ACATAAAAAGTATTCAAACTCAATTAATGGAGTTTGCTACAATTTTCCCA
ATCAAGTCTTCATTATAGCTTCATAGTTTGTAGTGACTTTTCTTTTTTCA
ACACAAACTACTATAGGATTGATAAAAACACTAGAAAACTATGGTGGAAG
CACAGAGAGTGTCCATCAAATACCTTATCATGAGTATAGCATGTAGTGCA
AGATGGATGTAATTTTGAGATGTCTGGCTAGAAATGTGACATACGACCGC
CTATTACTTGCACCCACTGTTTACTAAAGTTTTGTGGAATAAAGGGGAAA
AAATCTTCTCCGCACTGTACAGGGGGTTTCTTAAATGTTTGTATCTTTTC
CCGGGTTCTCCTCTCCTTTCAACCCGGAGCTAATTCTTTCTCTCATTACA
TTTCCCCAAAAAAAGGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no447_d20.g1 MSMg01no447_d20.g1 CHROMAT_FILE:
MSMg01no447_d20.g1 PHD_FILE: MSMg01no447_d20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:16:04 2005
         (426 letters)



>mm_chr7_110109975_110110800
          Length = 826

 Score =  824 bits (426), Expect = 0.0
 Identities = 426/426 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   attctgtagaccaggctggccttgaactcagaaatccacctgcctctgcctcccaagtgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attctgtagaccaggctggccttgaactcagaaatccacctgcctctgcctcccaagtgc 260

                                                                       
Query: 61  tgggattaaaggcatgcaccaccacgcctggcgatttttttttctttattggatattttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgggattaaaggcatgcaccaccacgcctggcgatttttttttctttattggatattttc 320

                                                                       
Query: 121 ttggaagtagaattgttgagaagagaaagatcagtgggaatggaagggtgacaagagaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttggaagtagaattgttgagaagagaaagatcagtgggaatggaagggtgacaagagaaa 380

                                                                       
Query: 181 gtagttgcatgggtgactaggataaaaatacattatatgtatggatgaagtgtcataata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtagttgcatgggtgactaggataaaaatacattatatgtatggatgaagtgtcataata 440

                                                                       
Query: 241 aaactcgtgccattaatatgcactaataaaaaacataaaaagtattcaaactcaattaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaactcgtgccattaatatgcactaataaaaaacataaaaagtattcaaactcaattaat 500

                                                                       
Query: 301 ggagtttgctacaattttcccaatcaagtcttcattatagcttcatagtttgtagtgact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggagtttgctacaattttcccaatcaagtcttcattatagcttcatagtttgtagtgact 560

                                                                       
Query: 361 tttcttttttcaacacaaactactataggattgataaaaacactagaaaactatggtgga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttcttttttcaacacaaactactataggattgataaaaacactagaaaactatggtgga 620

                 
Query: 421 agcaca 426
           ||||||
Sbjct: 621 agcaca 626


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 826
Length adjustment: 9
Effective length of query: 417
Effective length of database: 817
Effective search space:   340689
Effective search space used:   340689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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