BAC Information

Click to search

BAC

Clone NameMSMg01-447I11
Chromosome7 (Build37)
Map Location 61,572,613 - 61,683,613
singlet/doubletdoublet
Overlap geneMrps33p
Upstream geneLOC668789
Downstream geneLOC622146, Luzp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-447I11.T7 (MSMg01no447_i11.b1)MSMg01-447I11.TJ (MSMg01no447_i11.g1)
ACCAG535960AG535961
length764761
length of high quality
(start - end)		655 (70 - 724)549 (77 - 625)
definitionCHROMAT_FILE: MSMg01no447_i11.b1 PHD_FILE: MSMg01no447_i11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:16:27 2005CHROMAT_FILE: MSMg01no447_i11.g1 PHD_FILE: MSMg01no447_i11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:16:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,572,613 - 61,573,267)(61,683,065 - 61,683,613)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAAATCCGCGGAAT
TCTCCCCTAATTTCTGAAATACTGAGGTATACTGTTGCTCTGTGAAATGC
CAGTGAAATGCTAAAGAATTGTTCATTTTAATCAAAATATAACTTGTCAT
CATATTCCCCAATTAACATTAACATATCTTGTACAAGAAGAATATAAATG
ATCTTGTAGATTAAATGCTGAAATTTAAGAACTGGGATGATGAGAGATCA
AATATATGATAAAGTGAATATCACAACTTAAATAATAACTTTGAACTTGC
TTGGAAAATAGTACAGGATTATTATTGTCAATCTTCTGATGGCATTGGCT
TCTCAACCACCCAACATCTTTAAAATCTAAAGTCCATAGTCTACTACAAC
TCTTCCATGTATCTCACAAAAATATCCATTTCAATTTTTGTATAACGTAG
ATATAGCTATATTTTTAAAAATTATTGTAGTTACTGAGGAAAGTATAATT
ATTTTTAATAAAAACAATTTCCTTGCTAATATAATTCTTCTCATCTCATT
AAATGATCCTATAAGCATACTTCTGCTACTGAAAATGCTTTTGATTCACT
ATGATTTAGAAGAGTTTCTGTCTCTCTTTTGTAGTTTTCAATTCTCCCAC
AATGCTTACACAGTCGTATTATATTTACAGGCAGTTACCATTTAGTTACG
ACTTACTCATGAGTACTACTTAGGGAATGAATGCAAGATGTTTATTGTAG
AAGTATCATAAAGN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATAAATTAAAAAAAATTAAACACA
ACAGTTTAAGGAAGCCAGTGAAACACTTACTGACTCCCTAACTCCTGGCA
TGTTAATCCAATTCTATAGAGATGGTTATGGTCATTCTGTAACCATGAAT
TGTCACTTAGGGTTTTATATTGTAACTGTCAACCACATTTTATTTATTCT
TTATTTTTATTTTTCATGTTACTTCATTATTCAGAAAATTCTATTCTCTT
ATCCAACAATCACAACAAAAGCTATGGTGGATTTGAAACTGGGAGAACAC
TAGCTTTGTAACCTCTTTTATGACTTCTATCCTTTTGCCAACATCTTTAA
TATTGGTAATAAGTGAATTTATTGATGTCACAAAAGCACTACATATAAAC
TTTACTACTATTTTGATCTGTGTCCTTTAGCTCTAGAAGGCAGTCAAGAA
TGTTTGTATACAGGATTTCATACTATATTTCCCAGTTTTTAATGTTACAG
ATATCCTTAGCAACTCATCACACATAATATAAAATATTTATATGAGATTT
ATTAAGTTCCACTATATATTAAAGTTACTAGAAAGGGCTACTTATCAACA
CTAAATATTTCCAACTGACAGGACTTTGAGAACTAGAGAGGCACACCTTG
TATTTACTATTACCTATTAGCAGTGCCTATGTTCCCTTTTTATAACAATT
TTATAGATTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no447_i11.b1 MSMg01no447_i11.b1 CHROMAT_FILE:
MSMg01no447_i11.b1 PHD_FILE: MSMg01no447_i11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:16:27 2005
         (655 letters)



>mm_chr7_61572413_61573467
          Length = 1055

 Score = 1181 bits (611), Expect = 0.0
 Identities = 644/655 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tactgaggtatactgttgctctgtgaaatgccagtgaaatgctaaagaattgttcatttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 tactgaggtatactgttgctctgtgaaatgccagtgaaatgctaaagaattattcatttt 260

                                                                       
Query: 61  aatcaaaatataacttgtcatcatattccccaattaacattaacatatcttgtacaagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatcaaaatataacttgtcatcatattccccaattaacattaacatatcttgtacaagaa 320

                                                                       
Query: 121 gaatataaatgatcttgtagattaaatgctgaaatttaagaactgggatgatgagagatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaatataaatgatcttgtagattaaatgctgaaatttaagaactgggatgatgagagatc 380

                                                                       
Query: 181 aaatatatgataaagtgaatatcacaacttaaataataactttgaacttgcttggaaaat 240
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaaatatgataaagtgaatatcacaacttaaataataactttgaacttgcttggaaaat 440

                                                                       
Query: 241 agtacaggattattattgtcaatcttctgatggcattggcttctcaaccacccaacatct 300
           ||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 441 agtacaggattagcattgtcaatcttctgatgacattggcttctcaaccacccaacatct 500

                                                                       
Query: 301 ttaaaatctaaagtccatagtctactacaactcttccatgtatctcacaaaaatatccat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttaaaatctaaagtccatagtctactacaactcttccatgtatctcacaaaaatatccat 560

                                                                       
Query: 361 ttcaatttttgtataacgtagatatagctatatttttaaaaattattgtagttactgagg 420
           ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttcaatttttgtataacatacatatagctatatttttaaaaattattgtagttactgagg 620

                                                                       
Query: 421 aaagtataattatttttaataaaaacaatttccttgctaatataattcttctcatctcat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaagtataattatttttaataaaaacaatttccttgctaatataattcttctcatctcat 680

                                                                       
Query: 481 taaatgatcctataagcatacttctgctactgaaaatgcttttgattcactatgatttag 540
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 681 taaatgatcctataagcatacttctactactgaaaatgcttttgattcactatgatttag 740

                                                                       
Query: 541 aagagtttctgtctctcttttgtagttttcaattctcccacaatgcttacacagtcgtat 600
           |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 741 aagagtttctgtctctcttttgtacttttcaattttcccacaatgcttacacagtcgtat 800

                                                                  
Query: 601 tatatttacaggcagttaccatttagttacgacttactcatgagtactacttagg 655
           |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 801 tatatttacaggcagttaccatttagttacaacttactcatgagtactacttagg 855


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space:   674025
Effective search space used:   674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no447_i11.g1 MSMg01no447_i11.g1 CHROMAT_FILE:
MSMg01no447_i11.g1 PHD_FILE: MSMg01no447_i11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:16:27 2005
         (549 letters)



>mm_chr7_61682677_61683625
          Length = 949

 Score = 1038 bits (537), Expect = 0.0
 Identities = 546/549 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataaattaaaaaaaattaaacacaacagtttaaggaagccagtgaaacacttactgactc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 937 ataaattaaaaaaaattaaacacaacagtttaaggaagccagtgaaacacttactgactc 878

                                                                       
Query: 61  cctaactcctggcatgttaatccaattctatagagatggttatggtcattctgtaaccat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877 cctaactcctggcatgttaatccaattctatagagatggttatggtcattctgtaaccat 818

                                                                       
Query: 121 gaattgtcacttagggttttatattgtaactgtcaaccacattttatttattctttattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 gaattgtcacttagggttttatattgtaactgtcaaccacattttatttattctttattt 758

                                                                       
Query: 181 ttatttttcatgttacttcattattcagaaaattctattctcttatccaacaatcacaac 240
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 ttattgttcatgttacttcattattcagaaaattctattctcttatccaacaatcacaac 698

                                                                       
Query: 241 aaaagctatggtggatttgaaactgggagaacactagctttgtaacctcttttatgactt 300
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 697 aaaagctatggtggatttgaaactggaagaacactagctttgtaacctcttttatgactt 638

                                                                       
Query: 301 ctatccttttgccaacatctttaatattggtaataagtgaatttattgatgtcacaaaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 ctatccttttgccaacatctttaatattggtaataagtgaatttattgatgtcacaaaag 578

                                                                       
Query: 361 cactacatataaactttactactattttgatctgtgtcctttagctctagaaggcagtca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 cactacatataaactttactactattttgatctgtgtcctttagctctagaaggcagtca 518

                                                                       
Query: 421 agaatgtttgtatacaggatttcatactatatttcccagtttttaatgttacagatatcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 agaatgtttgtatacaggatttcatactatatttcccagtttttaatgttacagatatcc 458

                                                                       
Query: 481 ttagcaactcatcacacataatataaaatatttatatgagatttattaagttccactata 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 457 ttagcaactcatcacacataatataaaatatttatatgagatttattaagtaccactata 398

                    
Query: 541 tattaaagt 549
           |||||||||
Sbjct: 397 tattaaagt 389


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space:   506121
Effective search space used:   506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |