BAC Information

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BAC

Clone NameMSMg01-447J13
Chromosome7 (Build37)
Map Location 77,937,879 - 77,938,485
singlet/doubletsinglet
Overlap genenone
Upstream geneNr2f2, LOC100042833, B130024G19Rik, LOC100042838, LOC665486, LOC100041957
Downstream geneLOC665535
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-447J13.T7 (MSMg01no447_j13.b1)MSMg01-447J13.TJ (MSMg01no447_j13.g1)
ACCAG536012AG536013
length7551,348
length of high quality
(start - end)		608 (47 - 654)---
definitionCHROMAT_FILE: MSMg01no447_j13.b1 PHD_FILE: MSMg01no447_j13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:16:32 2005CHROMAT_FILE: MSMg01no447_j13.g1 PHD_FILE: MSMg01no447_j13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:16:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGG
AATTCTTTGGTTTTCCGGAGAGATTTTTGAAAGCCTCAGGCTACTGATCA
ACCTATTCCTTAATACATGTCCCAAGCAAAGTGGCTCCAAGGCTTTATAA
GCCAACATGGCTAGTGAATAGGTCATTATTCTATTTCCCTAACTCCCCAA
GGAAGGGCGGACTTGAAAACTATGGGGACCACCAGCTTCACAAGCCAAGG
TTTGAAAAGGGTGAGTTCAGAGACGTCACTATCATCCACTATGGAAGGTC
TAAAACATGGGCTCCTGGTATTGAATGGAAAGGAGGCATGCTGGGAAGTG
GAGGCCTCTGCACTTGGGGGCTATTCCAAAGTCAGAGTGAAGAGCAGCCA
TTTAAGCGTTCCTCCTGGTGGAGCTCAGGACCATTATCGAGGAAGGTCAT
GCAGAGTGCCCATGAGCCAAAGTTCTATTCTTCATTATGAATTTGTGCTA
CCTGTCCCTTGATTTCAAAGCTCTCTCCCTCAGCAGCACTCTCACAAAAG
AAAATGAAGGAGCCACCAGAATGGAGCCCCCCAGGGTGTGTGAGGAAAAG
AGTCTTGCCTATAAATCCACTACAGTGACAAATGTGGCCACCACTGGGTG
GTGTGGCATGGTGTTTGTTTGTTTGGTTGTTAATTTTTCGGCTGCTCGTT
TGAAAGAAGAAAGTAACTTTTACTTCTTGACTTTGGTACCTGAAAGTACA
TTGTG

ATGCAATTTCTATAGNCTGATGTGTACTACGTTGAGGAGCTACGCGGCTC
TCGTGCTCTTCACTGAACTTATGTATGGTGGGTGCACTTCACTCATGTTA
TGGTATATTCCGCCGTGTAAGTTGCTCTTGGGTGTGCGTGTGGCTGGTAG
TCTCCGCTGCTGCTGTCTACGCTTTTTGTGTAATTCTCTGTGTCTCTTGT
ATTGTATCTTTNCTCTTGTCGATTCCTGTGCACCTCTTCGTATGAGGTCT
GCTTCTTCGTGAGTAGTTGTCGGCGTAGCACTATATGATCTCTCACCGCA
TCGTAGGACCATCATGCGTACGATGNGGGACAGGTGATCTCCTTTATCCT
TTATCTTCATTGTGTGCTTTGTATTTTCTCTTTCCTGCTACTATCGCCAT
ATTCTGTCTTGTTACTATCTTCCTCTTCCTCGCTCAGTAATGCTGTGGTG
CCGGTACGTTTGCACGTTCGTGTGCGCGAGCGTGCACGTCGTCGCCGTTT
GTCCGGTGCGTCATACTTGACTAGCTGGCTGTGTAGTCTTGCCGTCGTTC
ATATACTGACTCGTACACACACCGATCGTATACATATACGCTCTCCTCTC
AGTATGTCATTACGGTGACGCTAGTCGCTCCTTGCCGTACTTACGTATAA
CAATGCAATGAATACATATAACATGGATCGGACGCGCAGAGGCGGTTCTA
TCTACATCGCTCACGGCCTTCGCACTGCGCGTCAACTCGAGATTATACTA
CCTAGATGAAATGCTCGCGTAGACTTGTCTCGGTCTATCTATTGCTACTC
GCATAAGTCTGGCGTTATACGGCACTACGATTAGCCATGTCACTACCTAA
TCAGTGCTATCCTAGTTGTTGTTATAGGTTTTCTCTCCGTAGGGATGCGA
GAGTGCTGGCGCTGTTGTAGTGCGTCGTGTTCGCCTGTCATTCTGCGAGC
GGTCGTAACGGTGGATCCGGCTGTCGTATGAGGTGTTTGCGGTCTACTTA
CCACTGCGACTCTATATTCACTCCATTATATACGAGTCACACGCACATGT
GTACGTCGTGCTGCCGTATGTACTATTGAACTGTTAACCTACATGTTATC
TGCAGACCTATGATCTCATTGTATCCTTACGCAGTTTATCGATTATATCT
TGCACATGATTTCATGACACACGCGCCTCTGTAATGCCNATGGCCGCATT
ATCCTACGTGCGGACTGGATCGCTCGAAGAGACGAGGATGATCGGCGGAC
GACAGTTCTGTGGCGGTCTCTTGGCTTTACGGTGTTATCGTCCACAATCG
CTCTCGTATCGCNCCATATCGTCCGCGTTCGTGTATCTGCTCTCACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no447_j13.b1 MSMg01no447_j13.b1 CHROMAT_FILE:
MSMg01no447_j13.b1 PHD_FILE: MSMg01no447_j13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:16:32 2005
         (608 letters)



>mm_chr7_77937677_77938685
          Length = 1009

 Score = 1116 bits (577), Expect = 0.0
 Identities = 600/609 (98%), Gaps = 5/609 (0%)
 Strand = Plus / Plus

                                                                       
Query: 3   ggaattctttggt--tttccggagagatttttgaaagcctcaggctactgatcaacctat 60
           |||||||||||||  |||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattctttggtgtttt--ggagagatttttgaaagcctcaggctactgatcaacctat 260

                                                                       
Query: 61  tccttaatacatgtcccaagcaaagtggctccaaggctttataagccaacatggctagtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccttaatacatgtcccaagcaaagtggctccaaggctttataagccaacatggctagtg 320

                                                                       
Query: 121 aataggtcattattctatttccctaactccccaaggaagggcggacttgaaaactatggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aataggtcattattctatttccctaactccccaaggaagggcggacttgaaaactatggg 380

                                                                       
Query: 181 gaccaccagcttcacaagccaaggtttgaaaagggtgagttcagagacgtcactatcatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaccaccagcttcacaagccaaggtttgaaaagggtgagttcagagacgtcactatcatc 440

                                                                       
Query: 241 cactatggaaggtctaaaacatgggctcctggtattgaatggaaaggaggcatgctggga 300
           |||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||||
Sbjct: 441 cactatggaaggtctaaaacatgggctcctgggaaggaatggaaaggaggcatgctggga 500

                                                                       
Query: 301 agtggaggcctctgcacttgggggctattccaaagtcagagtgaagagcagccatttaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtggaggcctctgcacttgggggctattccaaagtcagagtgaagagcagccatttaag 560

                                                                       
Query: 361 cgttcctcctggtggagctcaggaccattatcgaggaaggtcatgcagagtgc-ccatga 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 561 cgttcctcctggtggagctcaggaccattatcgaggaaggtcatgcagagtgcgccatga 620

                                                                       
Query: 420 gccaaagttctattcttcattatgaatttgtgctacctgtcccttgatttcaaagctctc 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gccaaagttctattcttcattatgaatttgtgctacctgtcccttgatttcaaagctctc 680

                                                                       
Query: 480 tccctcagcagcactctcacaaaagaaaatgaaggagccaccagaatggagccccccagg 539
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tccctcagcagcacactcacaaaagaaaatgaaggagccaccagaatggagccccccagg 740

                                                                       
Query: 540 gtgtgtgaggaaaagagtcttgcctataaatccactacagtgacaaatgtggccaccact 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtgtgtgaggaaaagagtcttgcctataaatccactacagtgacaaatgtggccaccact 800

                    
Query: 600 gggtggtgt 608
           |||||||||
Sbjct: 801 gggtggtgt 809


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1009
Length adjustment: 10
Effective length of query: 598
Effective length of database: 999
Effective search space:   597402
Effective search space used:   597402
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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