BAC Information

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BAC

Clone NameMSMg01-447L07
Chromosome7 (Build37)
Map Location 129,133,767 - 129,134,103
singlet/doubletsinglet
Overlap geneGga2
Upstream gene4933427G17Rik, EG668548, Mettl9, LOC668456, Igsf6, Otoa, LOC668556, Hs3st2, Usp31, Scnn1g, Scnn1b, Cog7
Downstream geneEars2, Ubfd1, Ndufab1, Palb2, Dctn5, Plk1, Ern2, 2010110P09Rik, Prkcb1, LOC668486, Cacng3, 4930413G21Rik, Rbbp6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-447L07.T7 (MSMg01no447_l07.b1)MSMg01-447L07.TJ (MSMg01no447_l07.g1)
ACCAG536094AG536095
length774779
length of high quality
(start - end)
337 (78 - 414)373 (75 - 447)
definitionCHROMAT_FILE: MSMg01no447_l07.b1 PHD_FILE: MSMg01no447_l07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:16:41 2005CHROMAT_FILE: MSMg01no447_l07.g1 PHD_FILE: MSMg01no447_l07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:16:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAATCCG
CGGAATTCACATGTCTTCTCTTATGATCCCAGCTGTGACACACCATTACA
GATCTTCTAACAAGCCCTGACGCAAAGCAGGCTCCAAGTAAGGGCTGTTC
CACCCCAAATTCAACCTGGAGCTCCCCAGACTTGAGAGCAAAGCCTCAAT
GTGTTGGTTCAGGGTCTACTTCATGCTACCAAAGATCCCGGAACATACTT
TGTGTGGGTTGTCGAGCAACAGCGTCTGAGATATCACTGCTGGAGGCATC
AAAGGACTGAATGCAGGGAGCTTGTTTCTGGATGCCGGCTGCAGCTTCAC
TCGCATTGACTATGGGGGAAATTGAACATGTTAATCCAGAAAGCCACCTC
ATCAGTAAGGACACTCAGGCCAACAGCAACTTAATCTCCCTCAAGAAAAT
CACTTCAGGACACCCATATGGTCCCACAGAAGCCTTTCCTTCTGCCCACA
GGAATATATTTAAACTGAGGTTCCCAGTTGGCCTCTGAGAGGCGGCATAA
AATGCCAGATAAAATCTTGGTCTGAGTTCTCAACCCGCCTCTTATGCTCA
ATGCACCTTGTGACCCACTCTTTATATCAAGCCTTGGTATTGATAACACT
GTCAAAGTAGTGTATGGTTTACCTTTTGGGCCGATCACGATCCACATTAA
TCCAAATTCTTGCTATTGCTCTTGTTTCGCTTATAATNCCTTCATTTCTT
CACTATTTATATAAATTGTTAACN
GCGATGATGTGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGGGTGGTGCCGGGCAGTGGTGGTG
CAGGCCTTTGATCCCAGCACTTGGGAGGCAGAGGCAAAAGGATCTCTAAG
TTCAAGGCCAGCCTGGTCTACAGAGTGAATTCCAGGACAGCCAGGGCTAC
ACAAAGAAACTCTGTCTCGAAAAACCAATAAAATGAAATAAAATAATTCC
AGGACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTG
GTCTACAAAGTGAGTTCCAGGACAGCCAGAGCTACACAGGAAACCTGTCC
CAAAACAACAACAGCAACAACAGTAACAACAACAACAAACTTTCTGAAAC
AGAGGTATGCGAGCTGCTGTCTCCACTCATGCACTTTACAAATAGGTAGC
AGAGGGCTGGAGAAATGCCTTGGCAGTTAAGAGCACCACCAACTGTTCTT
ACAGAGTCCTAGGTTCAGTATCAACATCCACATGATAGCTAACTACCATG
CCGCACTCTAGGTCTGGTTGTTTCTTGCATGTCACGCCAACATATGTGTC
GTGCCCGGATCTTCTATTCCTTTTAAATATCACTTCTTCTTAGCTTTCTT
TATTTCTTCCCCCTGGTCTCTATTACATCCCCTTTTTACCAACTGTTCGT
CTCATATTTCCACCGGTGTCTCTATTGGTCTTCCATTTTCGTTCACATCC
ATTGCCCTGGTCTTCCTTCTTTCCCTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no447_l07.b1 MSMg01no447_l07.b1 CHROMAT_FILE:
MSMg01no447_l07.b1 PHD_FILE: MSMg01no447_l07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:16:41 2005
         (337 letters)



>mm_chr7_129133567_129134303
          Length = 737

 Score =  629 bits (325), Expect = 0.0
 Identities = 334/337 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cccagctgtgacacaccattacagatcttctaacaagccctgacgcaaagcaggctccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cccagctgtgacacaccattacagatcttctaacaagccctgacgcaaagcaggctccaa 260

                                                                       
Query: 61  gtaagggctgttccaccccaaattcaacctggagctccccagacttgagagcaaagcctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtaagggctgttccaccccaaattcaacctggagctccccagacttgagagcaaagcctc 320

                                                                       
Query: 121 aatgtgttggttcagggtctacttcatgctaccaaagatcccggaacatactttgtgtgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatgtgttggttcagggtctacttcatgctaccaaagatcccggaacatactttgtgtgg 380

                                                                       
Query: 181 gttgtcgagcaacagcgtctgagatatcactgctggaggcatcaaaggactgaatgcagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttgtcgagcaacagcgtctgagatatcactgctggaggcatcaaaggactgaatgcagg 440

                                                                       
Query: 241 gagcttgtttctggatgccggctgcagcttcactcgcattgactatgggggaaattgaac 300
           |||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagcttggagctggatgccggctgcagcttcactcgcattgactatgggggaaattgaac 500

                                                
Query: 301 atgttaatccagaaagccacctcatcagtaaggacac 337
           |||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgttaatccagaaagccacctcatcagtaaggacac 537


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 737
Length adjustment: 9
Effective length of query: 328
Effective length of database: 728
Effective search space:   238784
Effective search space used:   238784
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)