BAC Information

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BAC

Clone NameMSMg01-447N13
Chromosome7 (Build37)
Map Location 26,454,937 - 26,455,417
singlet/doubletsinglet
Overlap geneA830041P22Rik
Upstream geneTex101, Gm1096, BC049730, EG210155, Cd177, Ceacam10, EG545936, LOC100043712, Lypd4, Dmrtc2, Rps19, Cd79a, Arhgef1, EG232974, Rabac1, Atp1a3, Grik5, Zfp574, Pou2f2, Dedd2, Zfp526, Gsk3a, 9130221H12Rik, Erf, Cic, Pafah1b3, EG623131, Tmem145, Megf8, Cnfn, Lipe, BC024561, LOC434148, Ceacam1, Ceacam2, LOC100043722, EG632778, 2310004L02Rik, B3gnt8, Bckdha, Exosc5
Downstream geneBC028440, Tgfb1, Ccdc97, Hnrpul1, Axl, LOC667950, Cyp2s1, LOC100043732, EG623475, Cyp2b10, LOC232993, EG667957, BC026762, Cyp2b13, EG668047, LOC623532, Cyp2b9, LOC667968, Cyp2a4, Nlrp9c, LOC100043195, Nlrp4a, Nlrp9a, V1re12, EG243881
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-447N13.T7 (MSMg01no447_n13.b1)MSMg01-447N13.TJ (MSMg01no447_n13.g1)
ACCAG536202AG536203
length762817
length of high quality
(start - end)		484 (45 - 528)181 (77 - 257)
definitionCHROMAT_FILE: MSMg01no447_n13.b1 PHD_FILE: MSMg01no447_n13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:16:53 2005CHROMAT_FILE: MSMg01no447_n13.g1 PHD_FILE: MSMg01no447_n13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:16:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTAGCTTCCATAGAAAGGAGAAAGCGAGGATGATTCTAAGTCCTT
CACCGCCACTCTGGAATCTTGAAATGTCTTGGTTTTCCCCCATTTTCCTT
CTTTTGTTTTTATTTTTGTGTTTGGTTGTTTTGACACAAAGTCTCAGGTA
ACCCAGGCTGTCCTGAGGTCCCCTTTGTAGCCAAAGATAACCTTGAGTTC
AGATCACCCTGCCTTCGTCTCTTACATGTTGATCATCAAAACCAGCACTT
CATGAGTGCCGGGTTGAGTGCTCTGCCAACTGAGCTGCATCCTCGGCCCT
GTTCTTTTGTGGTTTTGGTTCTTTGGAGACAAGATCCTAGTTTGTAGCCG
GGTTGACCTTGAAACTTCTCAGCCCTCCAAATACTGGGATTACAGGCAGT
CACCACCACATCTGGTCACACCTGTGTGTATCTGTGTGGAGTTCTCTCTA
GCCCACCCCCACTGCCTTAAGCATAGCATGGCTCCTCACATGCCTTTTTT
TTTTTTTTTTTTTTGGCTTAAACCAATACCCTCCCACTCCCAAAAACAGA
ATAAACTTTGGGGCCCAAAACAAAAGGAGCGATGGCCTCAGTTCTAAAAA
ATCTCCGGCCATAAAATACCTCCCACGCTAATGGTCCCTGGCGGATAAAT
CTTTATTACTCCGTAGCTCCCCCCTCCACTTCACACTTCCCTGCACGTAA
ATTCTTATAAAA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGGAGTCTGGTGGCCATTGATAA
GTATACGAGACACCTCTAAGTCAGTGATTCTCAATACGTGGGTCCCGACC
CCCTTAGGGTCACATATCAGATACTTACATTACGATTCATAAAGTAGCGA
AGTTACACTTATGAGGTAGCAACAAAATAACTTTATGGTGGTGGGGTGGG
GTGTCNCCCNNCNTGANGAGATGGATTANTGGATTGTANCATTANAAAGG
TTGATGACCACTGCTCTTTTTTTTTCTTAGAATGGAACTGGGTTGTCCCG
ATGGGTCATTTGTTTGTACTGACTGCTCCTACGGAGGTCTTGATTTTAGT
TTGCTGATTTCCCTGGGGTACAACGGTGCATTCGGCATGGTATCTTGCGC
CTTTTCTGGTGTTACCCTTGCTTGTTGCTCTTTGCTTCTATTCTTGTTCA
TGTGTGGCTCTTGGATTCGTCTTCTGGCCTCGCGCTTCTGGTTTCTTCCC
GTTGGTCAGTCGTCTTGAGCCTTTGGTGGGTCTGTTTCGCTGTGTGTGTT
CTTTTGTGTGCTCGTTCCGCTTCTCGCTTGTTTCGTTCCCCTTTTCCGCC
TTCCATTTGTACTCCGTTTCCTTACACTCTCTCCCCTTCCACCTCTTTAT
CCTTCCGGCGCATATCGCTGCACCCATTTCTGATTTACACCGCTCGTATT
TCTGATCGACCCTGTTGTTTGATTATCCACCGCGCATGCTCATATTTTTC
CGTTTGTTTCTTTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no447_n13.b1 MSMg01no447_n13.b1 CHROMAT_FILE:
MSMg01no447_n13.b1 PHD_FILE: MSMg01no447_n13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:16:53 2005
         (484 letters)



>mm_chr7_26454734_26455617
          Length = 884

 Score =  915 bits (473), Expect = 0.0
 Identities = 479/481 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcactagcttccatagaaaggagaaagcgaggatgattctaagtccttcaccgcc 63
           ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 204 ggaattcactagcttccataggaaggagaacgcgaggatgattctaagtccttcaccgcc 263

                                                                       
Query: 64  actctggaatcttgaaatgtcttggttttcccccattttccttcttttgtttttattttt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 actctggaatcttgaaatgtcttggttttcccccattttccttcttttgtttttattttt 323

                                                                       
Query: 124 gtgtttggttgttttgacacaaagtctcaggtaacccaggctgtcctgaggtcccctttg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gtgtttggttgttttgacacaaagtctcaggtaacccaggctgtcctgaggtcccctttg 383

                                                                       
Query: 184 tagccaaagataaccttgagttcagatcaccctgccttcgtctcttacatgttgatcatc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tagccaaagataaccttgagttcagatcaccctgccttcgtctcttacatgttgatcatc 443

                                                                       
Query: 244 aaaaccagcacttcatgagtgccgggttgagtgctctgccaactgagctgcatcctcggc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aaaaccagcacttcatgagtgccgggttgagtgctctgccaactgagctgcatcctcggc 503

                                                                       
Query: 304 cctgttcttttgtggttttggttctttggagacaagatcctagtttgtagccgggttgac 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cctgttcttttgtggttttggttctttggagacaagatcctagtttgtagccgggttgac 563

                                                                       
Query: 364 cttgaaacttctcagccctccaaatactgggattacaggcagtcaccaccacatctggtc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cttgaaacttctcagccctccaaatactgggattacaggcagtcaccaccacatctggtc 623

                                                                       
Query: 424 acacctgtgtgtatctgtgtggagttctctctagcccacccccactgccttaagcatagc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 acacctgtgtgtatctgtgtggagttctctctagcccacccccactgccttaagcatagc 683

            
Query: 484 a 484
           |
Sbjct: 684 a 684


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space:   414276
Effective search space used:   414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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