BAC Information

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BAC

Clone NameMSMg01-447N19
Chromosome7 (Build37)
Map Location 93,483,645 - 93,484,047
singlet/doubletsinglet
Overlap geneOlfr307
Upstream geneVmn2r-ps69, LOC330581, LOC100039339, Vmn2r70, Vmn2r-ps72, EG233445, Vmn2r-ps74, EG244114, EG620928, EG546980, LOC666382, LOC637652, LOC637667, EG666418, LOC100039471, EG546981, Vmn2r-ps86, Vmn2r76, Olfr310, Olfr309, Olfr308
Downstream geneOlfr306-ps1, Olfr305, Olfr304, Olfr303, Olfr301, Olfr1531-ps1, Olfr300-ps1, Olfr299, Olfr298, Olfr297, Olfr296-ps1, Olfr295, Olfr294, Olfr293, Olfr292, Folh1, EG546983, Vmn2r-ps87, LOC637896, EG621430, LOC621477, Nox4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-447N19.T7 (MSMg01no447_n19.b1)MSMg01-447N19.TJ (MSMg01no447_n19.g1)
ACCAG536214AG536215
length777842
length of high quality
(start - end)
406 (53 - 458)167 (81 - 247)
definitionCHROMAT_FILE: MSMg01no447_n19.b1 PHD_FILE: MSMg01no447_n19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:16:54 2005CHROMAT_FILE: MSMg01no447_n19.g1 PHD_FILE: MSMg01no447_n19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:16:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTTTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTCTGCATCGCTCTTCTGATGCAATGCTATGGATAAGGG
TAAATCTCCAGAATGCACTGGATTTAGTATATTGCTTAATCAGTGTTCTT
CTACCTCACAACAAGGTAGAATTCCATAGAAGCCAATACTGAATATGCTT
TCCCACCTATTGACTGATTTAACAATCTCAATAGCTATGTTGTCTTCTAC
ATAAGAAACAAAAGATATGAACCATCAAATGAATAAAGATAATCACTTTC
ATAGTTCCAAAGATGAAAATTTAAAACATCCCTGTATCACAAAAAGCATA
CAATTGTCTAATGCTTTGGGGTATTAAATAAGTAACCTTCTCAAGCAAAG
ATTTTGCTGCAACCTCCTGAGAGCACTTTTCACATCAGTGTTCCTCAGGC
TGTATATCAAAGGATTTAGTGCTGGAGGCAACACAGTATATAGCACAGAA
AATAGCCTCTCTGAAATTGATAGTGTATTTGTGAATGGTTTCAAATATAA
CAAGCAAGCCAGAACCAAGGAAAAAGTGGAAAACGGTAAGGGGCGAATAA
CAGTGGGCAAAGTTTTAAAATGGGCCTTTGGTGTAAGGAAACTTTCGCCA
GGGGAAAAAATGGTAAAATAAAAATCCTCACCCCGAGGAATCGGATTCCC
GAAAACCCCTTTTCCAAATGAAAAAGGGCCCAGGGTTTTCAAAGGAGATT
TTTATTGGGGGGATCTCCAAAAATTGG
NNNNNTTCAATGATATGNNTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACCCC
ATTTTTTAATAGGGTTGTTTGATTTTCTGGAGTCCAGCTTCTTGAGTTTT
TTTTGTATATATTGAATATTAGTCCCCTATCAGATTTAGGATTCATCCCA
TAAACAACCAACAAACCCAGATACTATTGCATATGCCAGCAAGATTTAAC
TGACAGACCTGATATAGTATCTCTGAGAGTATGCAGGCTCCAATACGAGG
GATGCCCATCTCTATGATGGACCGGGCCCCCAAAAACTAAACCTAACAAG
CCGCTAAGGAAATAAACCCCCCATTTCTTTATTAAGCCCCCGAGGCNNAA
NCAGGGGGGGCTCATCGATACCTTGAAANNNTCTNNNNNNNNNNGGGGGG
GGGGGGGGGTGGGGGAGAGGGGGGGGGAAGAGAGAGAGTGGGGGGCGGGT
GGGGGAGGGGGTGGGGTGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNCNNNCNNCCCNNTTCCCACAGATTGGTG
TGGAGGGGGGGAGGGGGAGATAGGNNNNNNNNNNNNNNNNNTNNNAAAAA
AAAATANNNNNNNNNNNNNNNNNNNNNNNNNNGNNCGGNGCCTCTTTTNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNCNNNNCCCNCCGCGTCATGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no447_n19.b1 MSMg01no447_n19.b1 CHROMAT_FILE:
MSMg01no447_n19.b1 PHD_FILE: MSMg01no447_n19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:16:54 2005
         (406 letters)



>mm_chr7_93483442_93484247
          Length = 806

 Score =  712 bits (368), Expect = 0.0
 Identities = 395/404 (97%), Gaps = 2/404 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctctgcatcgctcttctgatgcaatgctatggataagggtaaatctccagaatg 63
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctctgcaccgctcttctgatgcaatgctatggataagggtaaatctccagaatg 263

                                                                       
Query: 64  cactggatttagtatattgcttaatcagtgttcttctacctcacaacaaggtagaattcc 123
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cactggatttagtctattgcttaatcagtgttcttctacctcacaacaaggtagaattcc 323

                                                                       
Query: 124 atagaagccaatactgaatatgctttcccacctattgactgatttaacaatctcaatagc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atagaagccaatactgaatatgctttcccacctattgactgatttaacaatctcaatagc 383

                                                                       
Query: 184 tatgttgtc-ttctacataagaaacaaaagatatgaaccatcaaatgaataaagataatc 242
           |||||| || |||||||||||||||| ||||||| ||||||||||| |||||||||||||
Sbjct: 384 tatgtt-tccttctacataagaaacagaagatataaaccatcaaataaataaagataatc 442

                                                                       
Query: 243 actttcatagttccaaagatgaaaatttaaaacatccctgtatcacaaaaagcatacaat 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 actttcatagttccaaagatgaaaatttaaaacatccctgtatcacaaaaagcatacaat 502

                                                                       
Query: 303 tgtctaatgctttggggtattaaataagtaaccttctcaagcaaagattttgctgcaacc 362
           ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tgtctaaagctttggagtattaaataagtaaccttctcaagcaaagattttgctgcaacc 562

                                                       
Query: 363 tcctgagagcacttttcacatcagtgttcctcaggctgtatatc 406
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tcctgagagcacttttcacatcagtgttcctcaggctgtatatc 606


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 806
Length adjustment: 9
Effective length of query: 397
Effective length of database: 797
Effective search space:   316409
Effective search space used:   316409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)