BAC Information

Click to search

BAC

Clone NameMSMg01-448E01
Chromosome7 (Build37)
Map Location 145,565,623 - 145,565,745
singlet/doubletsinglet
Overlap geneTcerg1l
Upstream gene9430038I01Rik, Txnl2, LOC435235
Downstream geneLOC100043290, Mapk1ip1, Ppp2r2d, Bnip3, EG668784, LOC669185, 6330417G02Rik, Dpysl4, Stk32c, LOC100038956, Lrrc27, Pwwp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-448E01.T7 (MSMg01no448_e01.b1)MSMg01-448E01.TJ (MSMg01no448_e01.g1)
ACCAG536511AG536512
length719770
length of high quality
(start - end)
589 (45 - 633)124 (119 - 242)
definitionCHROMAT_FILE: MSMg01no448_e01.b1 PHD_FILE: MSMg01no448_e01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:27 2005CHROMAT_FILE: MSMg01no448_e01.g1 PHD_FILE: MSMg01no448_e01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCACCTGTGCCATACCGAATGGCAGAGAAGCACCTGAAAAAATGTT
CAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACACTGAGATTC
CACTTCACTCCAGTCAGAATGGCTAAGATATCAAAAACTCAGGTGACAGC
AGATGCTGGCGAGGATGTGGAGAAAGGGGAACACTCCTCCATTGTTGGTG
GGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCA
GAAAATTGGACATAGTACTACCGGAGGATCCCGCAATACCTCTCCTGGGC
ATATATCCAGAAGATGTCCCAATCGGTAAGAAGAACACACACTCCACTAT
GTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGAT
GCCCCTCAATAGAGGAATGGATACAGAAAATGTGGTACAGTTACACAATG
GAATACTACTCAGCTATTAAAAAAATGAATTTCTGAAATTCCTAGGCAAA
TGGATGGACCTGGAGGGTATCATCCTGAGTGAAGTAACCCAATCACAAAG
GAACTCACACAATATGTACTCACTGATAAGTGGATTTTAGCCCAGAAACT
TAGGATACCCAAGATATAAGATACACCTTGTCAAACGCATGACATTTCAG
AAGAATGAAGACCTAAGTG
AAACCGATGATGTGGTAGCCTGGNGNCGCCTGATCTAAGCTGTAGGTGAC
CTATAGAATTACAAAAAAGTCAGTTGGAAATAGATTCTAGAATTTCTCAT
GCTCACTGAGATAGCCCGGCTGGTGAGCTGTGGGGATAGAATGCTATGAT
CTTGAGGAAGAGACATCCGGCAGTGATGCAGGCGAGAGAAGCAAATTCGT
GCAGAGGACCACAACGGTTACTTTTCAAATGACATTTGTGATTGTTTCTG
AAAGGTCAAGATATGAATATGGACGAATAGAGAGCAGGGAGAGGAAGGNG
AGGCGGCTTTCAGTAATTTGAGCCNCCCNGCTACCCACCAGAGCGCGAGC
ATTTTGTTCCCCCCGCCTCCCAGAAGGACCTGACTCGAAGTGCCTCTGGA
TGCTGACCCCCCCCACTGTTTTTATTTCAGTGTTAGCCCGCCGTTTTCTT
ACCCTCACCCGGAGAACCCTTTGTGTCTGTGTTTTTAGCCCCCTTTTTGT
GTTCTTCTTCCTGTATGATTTCACATACTCACCATCCTCCTCCTTCCTCT
TTTTGTTTTTTTTCCTTTCTCCTTTTCCCCTTCTTTTCTTCCCCCCTCCC
GTTATGCTTCCCTTCACTCGCGTGATTATTTCTCTGCTCTCCTCCTCCTT
TGTACTCTTTCTTCTCTTTTTTTTTATTACGAGAATTCCTGTCTCTTCCC
TCGTCCCTCTATACTTTTCTCCCTCTCCCCTATTGTTTATTCTTCCCCCC
CCACTCCCCCCCCCTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no448_e01.g1 MSMg01no448_e01.g1 CHROMAT_FILE:
MSMg01no448_e01.g1 PHD_FILE: MSMg01no448_e01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:28 2005
         (124 letters)



>mm_chr7_145565423_145565946
          Length = 524

 Score =  223 bits (115), Expect = 4e-63
 Identities = 121/123 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gctggtgagctgtggggatagaatgctatgatcttgaggaagagacatccggcagtgatg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 323 gctggtgagctgtggggatagaatgctatgatcttgaggaagagacatccggcagcaatg 264

                                                                       
Query: 61  caggcgagagaagcaaattcgtgcagaggaccacaacggttacttttcaaatgacatttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 caggcgagagaagcaaattcgtgcagaggaccacaacggttacttttcaaatgacatttg 204

              
Query: 121 tga 123
           |||
Sbjct: 203 tga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 124
Length of database: 524
Length adjustment: 8
Effective length of query: 116
Effective length of database: 516
Effective search space:    59856
Effective search space used:    59856
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)