BAC Information

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BAC

Clone NameMSMg01-448G05
Chromosome7 (Build37)
Map Location 147,660,903 - 147,843,443
singlet/doubletdoublet
Overlap geneOlfr534-ps1, Olfr535, Olfr536, Olfr537-ps1, Olfr1523-ps1, Olfr538, Olfr1553-ps1, Olfr46, Olfr61, Olfr53
Upstream geneInpp5a, Nkx6-2, E030019B06Rik, 9330101J02Rik, LOC100043472, EG434253, EG664869, Gpr123, LOC244229, Kndc1, Utf1, LOC100039095, 6430531B16Rik, Adam8, Tubgcp2, Zfp511, Msx3, Drd1ip, Prap1, 1810014F10Rik, Echs1, Paox, Mtg1, Sprn, Olfr522, Olfr523, Olfr524, E430002D04Rik, 5830411N06Rik, EG622335, Olfr525, Olfr527, GA_x5J8B7W72BC-152913-152037, Olfr60, GA_x5J8B7W72BC-125691-125311, Olfr530, LOC622973, Olfr531, Olfr532, Olfr533
Downstream geneOlfr539, GA_x5J8B7W3EKE-4574231-4574913, Olfr45, Olfr541, GA_x5J8B7W3EKE-4522784-4521912, Cyp2e1, Syce1, LOC100043529, BC066028, 1190003J15Rik, Scgb1c1, Odf3, Bet1l, Ric8, Sirt3, Psmd13, LOC100043546, Cox8b, Nlrp6, Athl1, Ifitm5, Ifitm2, Ifitm1, LOC665143, Ifitm3, Ifitm6, B4galnt4, Pkp3, Sigirr, Trp53i5, Ptdss2, Rnh1, LOC546015, Hras1, Lrrc56, 1600016N20Rik, Rassf7, AA673488, Irf7, Mucdhl, Sct, Drd4, Deaf1, Tmem80, Eps8l2, B230206H07Rik, Taldo1, LOC100043585, Pddc1, Cend1, Slc25a22, Lrdd, Rplp2, Pnpla2, Efcab4a, Cd151, Polr2l, Tspan4, Chid1, Ap2a2, Muc6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-448G05.T7 (MSMg01no448_g05.b1)MSMg01-448G05.TJ (MSMg01no448_g05.g1)
ACCAG536614AG536615
length762764
length of high quality
(start - end)		391 (41 - 431)373 (83 - 455)
definitionCHROMAT_FILE: MSMg01no448_g05.b1 PHD_FILE: MSMg01no448_g05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:39 2005CHROMAT_FILE: MSMg01no448_g05.g1 PHD_FILE: MSMg01no448_g05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(147,660,903 - 147,661,287)(147,843,073 - 147,843,443)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGAATCCGCGGAAT
TCAGATGCTGACTTCTAGGCACAGATATCTAGCTGAAGTCCAGATGATGG
CATGATCAAGCATCTGATGTCTCTATGCTATGTAAATTGTTTTCTTCACC
TCTAATTGGTTAATAAAGAGCTGGTCAACCAATTAGCCAATTGGGCAGAA
GAGAATAGGGTAGGACTTCAAATCCCAGTCCAGGGGACCCAGCAGAGACA
AGAGGATAGAGGAGTACCATGAGGAAAAGAAGATATGGAGAAACCATGTG
ACAAGATTAGCAGGATTCAAGATGAGATCACAATGAGAGAGCAGTCATGA
GGATACACATGCTCTTTTCTGAAAGGAAAATGAATAATGAATTCATCTGG
TGGAGTGAAGAGATTTGGGGGCAGAAACTAGAAAGAGTGCCAGGAAATGA
TACTGCCATTGGGACGTAATATATGAGCCACGTCTGACTTCTATATAGCG
TATGCATCTTCCCGACTATGTAGCCGGCTTTCTATACGGACCTGACTTTC
ATTCAACCTGTTCCGCTATCATCGCTTGTTTCCGCCCCCATTCCTTTGGT
TCCCTATATTGTCCCTTCTCGGCCGCCAATTTTGTTCTTCCGCTCCTCCG
TATCTTTTTTCGTGGCTTTGGACCTCTTTCCCCCCGCTAGCAATTGTTTC
ATTTCCCCCTCATTTCCTTTTCCCTTTTACTCTTCCTTCCATATTTTTTC
TCCCTCTCACTG

TTTTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAAATAATGTGTATATG
AGATGTATGCACATGTATGTGTTTCTGACAAGTTGTATACTTTTGTTTAG
GTGTGTATCAGTTGCTTTATAGCTTAAATCATAGTTATGAGACTAATACT
TGAAGAAATGACTCAAAACATGATTGAAGGTGACACAAATAGTGTCAAAG
AAATCAATAGGTATATCAGGTCAAGGCCCACATTTCACAGATGCTACTCT
TTACTACCACCATAACTGAATTCATATTTAACTGGGACAGTGTTCTCAGC
CATCCCAATGCTGCAGTCCTTTAAAACAATTGTTCTTCATGTTCTGATGT
CTTTTAAGCATAAACTTGTTTTTGCTGCTACTTTATAATGTTAATTTGCT
ATGCAATGTTGGTACATTTACATTATGATTAATGGTAATACCTGGCATTT
CTATCCTACGTGACACCAATCAAAGTGTTATCTGACCTTTAAAGAACTTT
AAACCCCGAACCTGATACTGTATGTCCTACGCAAGCCCACTACCTCTTCC
CGCCCCCTTTTCAAAATCCCCTCCGGTTCTTTTTTACCCCCTCCCTTCTT
TGTCTTTCTTTTATCTCTATTTTCTTCTTTGTGCCTCCCTTTCCTTCCTT
CTCTTCAATTCTTTATATATCTCCCCATTGGTATATAAACCCACCTCTTC
CGCTTCTCTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no448_g05.b1 MSMg01no448_g05.b1 CHROMAT_FILE:
MSMg01no448_g05.b1 PHD_FILE: MSMg01no448_g05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:39 2005
         (391 letters)



>mm_chr7_147660697_147661487
          Length = 791

 Score =  690 bits (357), Expect = 0.0
 Identities = 378/385 (98%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattcagatgctgacttctaggcacagatatctagctgaagtccagatgatggcatgat 66
           ||||||||||||||| |||||| |||||||||||| ||| ||||||||||||||||||||
Sbjct: 207 gaattcagatgctgatttctagacacagatatctatctgcagtccagatgatggcatgat 266

                                                                       
Query: 67  caagcatctgatgtctctatgctatgtaaattgttttcttcacctctaattggttaataa 126
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 267 caagcatctgatgtctctatgttatgtaaattgttttcttcacctctaattggttaataa 326

                                                                       
Query: 127 agagctggtcaaccaattagccaattgggcagaagagaatagggtaggacttcaaatccc 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 agagctggtcaaccaattagccaattgggcagaagagaatagggtaggacttcaaatccc 386

                                                                       
Query: 187 agtccaggggacccagcagagacaagaggatagaggagtaccatgaggaaaagaagatat 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 agtccaggggacccagcagagacaagaggatagaggagtaccatgaggaaaagaagatat 446

                                                                       
Query: 247 ggagaaaccatgtgacaagattagcaggattcaagatgagatcacaatgagagagcagtc 306
           |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 447 ggagaaaccatgtgacgagattaggaggattcaagatgagatcacaatgagagagcagtc 506

                                                                       
Query: 307 atgaggatacacatgctcttttctgaaaggaaaatgaataatgaattcatctggtggagt 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 atgaggatacacatgctcttttctgaaaggaaaatgaataatgaattcatctggtggagt 566

                                    
Query: 367 gaagagatttgggggcagaaactag 391
           |||||||||||||||||||||||||
Sbjct: 567 gaagagatttgggggcagaaactag 591


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 791
Length adjustment: 9
Effective length of query: 382
Effective length of database: 782
Effective search space:   298724
Effective search space used:   298724
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no448_g05.g1 MSMg01no448_g05.g1 CHROMAT_FILE:
MSMg01no448_g05.g1 PHD_FILE: MSMg01no448_g05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:39 2005
         (373 letters)



>mm_chr7_147842989_147843761
          Length = 773

 Score =  710 bits (367), Expect = 0.0
 Identities = 370/371 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccaaataatgtgtatatgagatgtatgcacatgtatgtgtttctgacaagttgtatactt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ccaaataatgtgtatatgagatgtatgcacatgtatgtgtttctgacaagttgtatactt 396

                                                                       
Query: 61  ttgtttaggtgtgtatcagttgctttatagcttaaatcatagttatgagactaatacttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ttgtttaggtgtgtatcagttgctttatagcttaaatcatagttatgagactaatacttg 336

                                                                       
Query: 121 aagaaatgactcaaaacatgattgaaggtgacacaaatagtgtcaaagaaatcaataggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 aagaaatgactcaaaacatgattgaaggtgacacaaatagtgtcaaagaaatcaataggt 276

                                                                       
Query: 181 atatcaggtcaaggcccacatttcacagatgctactctttactaccaccataactgaatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 atatcaggtcaaggcccacatttcacagatgctactctttactaccaccataactgaatt 216

                                                                       
Query: 241 catatttaactgggacagtgttctcagccatcccaatgctgcagtcctttaaaacaattg 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 cataattaactgggacagtgttctcagccatcccaatgctgcagtcctttaaaacaattg 156

                                                                       
Query: 301 ttcttcatgttctgatgtcttttaagcataaacttgtttttgctgctactttataatgtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 ttcttcatgttctgatgtcttttaagcataaacttgtttttgctgctactttataatgtt 96

                      
Query: 361 aatttgctatg 371
           |||||||||||
Sbjct: 95  aatttgctatg 85


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space:   278096
Effective search space used:   278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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