BAC Information

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BAC

Clone NameMSMg01-448J13
Chromosome7 (Build37)
Map Location 107,820,660 - 107,820,799
singlet/doubletsinglet
Overlap genenone
Upstream geneSlco2b1, Olfr520, Olfr521, Neu3, Spcs2, Xrra1, EG330602, Chrdl2, Pold3, 2610209A20Rik, Kcne3, LOC631577, Pgm2l1, Gpx2-ps1, P4ha3, Ppme1, AU020772, Ucp3, Ucp2, Dnajb13, LOC667112, Chchd8, Mrpl48, LOC100041155, Rab6, LOC100041167, Plekhb1
Downstream geneB930006L02Rik, LOC100041204, Tnfrsf19l, Arhgef17, P2ry6, P2ry2, LOC100049539, EG435996, Fchsd2, EG622673, Atg16l2, Stard10, Centd2, Pde2a, Art2a, EG630138, Art2b, Clpb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-448J13.T7 (MSMg01no448_j13.b1)MSMg01-448J13.TJ (MSMg01no448_j13.g1)
ACCAG536772AG536773
length8271,506
length of high quality
(start - end)
141 (83 - 223)---
definitionCHROMAT_FILE: MSMg01no448_j13.b1 PHD_FILE: MSMg01no448_j13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:55 2005CHROMAT_FILE: MSMg01no448_j13.g1 PHD_FILE: MSMg01no448_j13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCGCACTGCGCGGA
ATTCAGGGTTTTTGCATGACAAGCGAGCGNTCCTTCACTGGGCCAGTTCC
CAGTGTGGGTCTTTCATCTTTGGCCAGCTTTCCTCTTGACTTAACCAGAT
ACTCCCCCATGCCCTAGAATTATGTGAGGAAAGTTCTGAGTCCCATTGTC
TTAGTTAGGGCTTTACAGCTGTGAACAGACACCATGACCAAGGCAACTTT
TTTTCCTTTTTTTTTCTTTTTTCTTTTCCGGCTGTTTGATACTGGTCTTC
TCTGGATACCTCTGCTTGTTTTTTTTTACCCCCTCTGCAGATCTAGCTGG
CCCTCGTTCTCTTTTTTCTTTCCTGTCTCTGCGTTTTAGTCGTGTATATC
TCCTTTTTTTTTTTCCCCCCTCCCCCCCTCTTCTTCTTTTTCACACTGTC
TTTTCACACCTTTTTTGCTCTCCTTGATTCGCAGTTCTATGTCCCTATTC
CCTTCTTCCCCTTTTCCCCCCTCCACTTTATCTTTCTTCTTCTATTCCTC
CTCCCCTTTTTTTACTTTCTTCTTTTCCCCTTCCTTTTTTCCCCTTTTCT
TCCTCTTACGTTTATCTCATCTTTTTAAACTAGTTCATCCTTCTCTACTC
CTTTGTCCGCCATTCTTTCCCGTTCCTTTTTTTTTTTCCACCCCTCCGAC
TCTCCCTCTTTTTTCCTACTTTATACGTCTCCGCCTTTTGTTCCCCTTCC
TCCTTTTCTTCGTCCCTTCCTCTCTTCCTTTTTCACCTCCCTTCTTTATC
CTACTTTCTGTTTCCTTCCTTTTTTCC
TTTTCTTCGTGCGGGCGGCGCTTCACACTCCTAAGGCGGGCGGGGGAGCG
CGCGATCTCTCTCCTTACGAGAGATAGAGGAGATCGTGCGAAGGCGGTGT
GTGTTCTCCTGCACGCTCGCGCGTGTCTCGCTGCTATTCCCACGACGCCG
ATCTACTTAGTACCCGCTCTACATACGTCCCAGCGAGATCACACCACGAC
ATTTNCCACACACCACCCTAGTCCTCTGATAGATGAGTTCTCCGCGCGTC
TCTCGTAGCTTATCGCATTTCGCTTGCCGTCTCGATCTAGGTATGCATTC
CGCGCCTCACCAGCACTCGCTCTATGCCCCGCCGTTCCGTTCTTGTTGCT
TCCGCCGCCTTCCTTCTCCCTCTACTCATTTCTCCGCTTCGCCGTTCGCT
GTTCGATTGGTTCCGATACGTATTCTATAATACGTAATTTTGCAGCTATA
ATCCTCTTTCTGTTCCACGTCGTGTCGGTTGAGTGGATCCGTAGAGCGTA
CAATGACGCGCCCGCGACGCCGCGTCGAGGTGGTTGATGGCACGGTAGGT
GGAGAATAATGCGGATGATGTCTGTCTTCTAATGATCTGTGTCCACGCCG
CTACCGCCTAATTATTATATATTATTTACGCGTTAGTACGTCGGACGCCA
TTATCACGTACCAATATACGTATCAACTCATATCCTGCAGCACTTCATTA
CGACCGCGTCTATAAATATACATCTACTANTCCTCNCCCACATAATATCA
TCGCCTCCTATAATATGTCACTCATCCTCTCCTGGTACCGTAGCGTGTCG
GGCTGCAATCTCGTATCATCTGGCGTTTATGATTAGCTCATCGGCAATCG
AGATTATGATACTTTCGCGCTGCTAGACGACGATTGACCTGTGACATTAT
GAACGTATGCGTCTCTCTCTCATGTGCGCACACGCACGCGTCCGACCCTA
TCTTTACCGTATCACCCACTTGCGATCGCGTGATGCATATTCAGTGGTCG
CAGCTTATTAGATACACTAATCGCTCGCGCCGTTGATCTGTATTGTAATA
CCGCCGCACACACTCAGCACGTCCGTGCTCGTTCGTTGTATTTCTCTCTT
ATCGATGTTCATACGCCGTGCACTTACATCATACACTTATTATAGCTATA
ATGTATCCATATACAGTCGCGTGTTACGTCTCTATATTGATGCGAAGTGA
TGTGATTTGCGCTGTCTTCGTCTTGTATATACTCCGCGCTGATTTTNATC
GCGCCGCCGTANTACGCNCGCCGCGCGATAGATAGCAGACTCCTCCTCTG
CGTTATCGTCTTCGTGAGAATCGAGCCTACATACACCCGCACGCACCACT
AGCTTCTACACTCCCATATGTATTATACATNCACTACGCGCGCCGCCTTT
CTAACTCGTATCTGCGTATTTGGCGCGTGTCCCAATTTGACGATACATGC
TGTATTCATCGCTTTTGTCAGCGCGATGAGTGCGTGAGCACCGCCGCGTC
CGCGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no448_j13.b1 MSMg01no448_j13.b1 CHROMAT_FILE:
MSMg01no448_j13.b1 PHD_FILE: MSMg01no448_j13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:55 2005
         (141 letters)



>mm_chr7_107820460_107820999
          Length = 540

 Score =  257 bits (133), Expect = 2e-73
 Identities = 139/141 (98%), Gaps = 1/141 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttcactgggccagttcccagtgtgggtctttcatctttggccagctttcctcttgactt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttcactgggccagttcccagtgtgggtctttcatctttggccagctttcctcttgactt 260

                                                                       
Query: 61  aaccagatactcccccatgccctagaattatgtgaggaaagttctgagtcccattgtctt 120
           ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 261 aaccagatactcccccatgccctagaattatgt-aggaaaattctgagtcccattgtctt 319

                                
Query: 121 agttagggctttacagctgtg 141
           |||||||||||||||||||||
Sbjct: 320 agttagggctttacagctgtg 340


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 141
Length of database: 540
Length adjustment: 8
Effective length of query: 133
Effective length of database: 532
Effective search space:    70756
Effective search space used:    70756
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)