BAC Information

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BAC

Clone NameMSMg01-448L13
Chromosome7 (Build37)
Map Location 141,479,369 - 141,479,560
singlet/doubletsinglet
Overlap gene4933400E14Rik
Upstream geneLOC668747, 4930404H21Rik, LOC100043237, 2700050L05Rik, Mmp21, Uros, Bccip, Dhx32, LOC100043695, Fank1, Adam12, A130023I24Rik
Downstream geneLOC100043248, LOC100043699, LOC668750, Dock1, B830028B13Rik, EG668693, LOC100043254
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-448L13.T7 (MSMg01no448_l13.b1)MSMg01-448L13.TJ (MSMg01no448_l13.g1)
ACCAG536867AG536868
length7301,221
length of high quality
(start - end)
192 (327 - 518)---
definitionCHROMAT_FILE: MSMg01no448_l13.b1 PHD_FILE: MSMg01no448_l13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:05 2005CHROMAT_FILE: MSMg01no448_l13.g1 PHD_FILE: MSMg01no448_l13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCGAAATGCGCGG
AATTCTCTAGAATGACTTGCAGACTTCCTTTCCCAGAAGATGGCTGACAG
TTCTTGGCCTGGAGCCAGTATTAACATTGCTTTGCATTCTCAGCACACCC
AGGGGGAGATGTGACTCAGTTGACAAGTGATAACAGCAGCCTTGGTCACC
ACAGCTCCTGCAGTCAGCCCAGCAGGGCCACACTCTCACTTCTGCCTCAT
CTGATTCCCCTGAATGTTTTCCCATAAAATGCTGAGAGAAGTATTTGTGG
TCAGCTCTCCCAGTATTATTTTTTAGAGGAATTTTAAAATGTGCTTATCA
GAGAAAAGTCAAATTTTCTTTATCAGCTCACAGAGGAAACAGGAAATAGG
AGCTACTTGAAGACTTCTGGTGCAGAGCCCTTCCTTCCCAGCCAGACTTC
GGACACTGCGCTGGGTTGCCCTACTGCCTTGCTCCATTTTTAAAAGAAGT
TTACGTTTTTTTAGGAGGCGTACGAAGAATAGACTGGTTCTCATCTGTTG
GTTAGAATTCGCCTTACAGGATGAGGTCATTTCCAATCACAGTAATAATA
AGTAGGATCTCTGCTCTGCATATGGTGGTCGCAAAGGGCGCTCATGTATG
ACTTGTCCTCAGCCCTGGCTCTTGCCTTTCAAGTGGCTTCCCCGCGTTCA
CCANTTCTTCAACGTATTAACCGTTGAGAA
CATTTTGTCTTGCCGGTACGACACAGGGGCGGTGGCGAGGTCGCTCCCCA
TAAATGAGTGTGGGTGGTAGGANGGGGTATTCCCCACCTATAGGGTGCGC
GTGTAAGCATAACAAGAACTAGAGCACGACAGGTGGGGTAGACGAGAGTA
GCTGGCTCGCACGAATCACTAAAATCTGTATGAGTCTCGCCGCTTACGAG
ATATGGATATATTAGCTGGTCATGAGCTCGGATCGGAAGAGAAGACGCGA
GAGCCACATGCCANTACTCCGACCCCCTTTATCCCTACTATTTTCGTCTA
GCGTCTGATAGGTACGGCGTACATTGACAATCGAACTCCGCGGATAGACA
AATAGACAGAATAATGATAAATATAATATAGTAGTACGCGCCGCGCGCGG
ATGTGTATGGCGCGGTCGTGCGCTGACTGCTCGTATCTCACTATTAGGTG
TCGCTGCTTTCTCTCATTGCGATATTAATCGGGAGGAGTCGCGCGGTGTG
GCTTCGTTTTCGTATAGTTGTAGTTGCAACTTTATTCGATGCGCCTTATT
ATCGCTTCGTNCGCTCGTGCTTATTCGTAGCAGATTAGGTTCGAGCCGCC
GGCGCTCGATTCGCTACGCTNCNNCCCNCCCACCNCCNNCCCCNNCCCNC
CAAGAGGCGACACAGTGCGATGTGGTAGTGTCGGAGGTGCTGCNCGNNAG
AGAGTTGCTTATCCGTCTGTGTCCACCCGACCTGTGAGCGGTATGTATCC
GAACACGCTATCAGAGAGCAGATGAGAAAGATTGTGCGGAGCGAGACTAC
AATATACGCCGCCGGCTGTGCGGTATGTTATACCACGCCCTATGGCGCTC
TGCGTACGCTGTGTTATAGATCCATAGACATCATGCGTCGGCAGTCACTT
GTCGTTGCCTCGTCTTGTTATATGTGTCGTTTCAGTATCTCGATAACAAT
CTGTATATGCATCCTACACGNCACCACCCTCGTCCCATAGTTGACGCGCG
CGTTATTTACGCTCCCCTCTATCGCGCCACCGCTAGATATCGAATATATA
CATAGTGTAGTGTCGTGAGAGCGACGAAAGCACGAGCTCGCTTCTTGCTA
GTTGACGGTNNTATTNTGACTNCGCCACACNCNNNCCTTTTTCTCTCCTT
TAAGTGNTCGCCCCCNAGGACTTCTAGATATCTCAGGTTATGCCGACTCT
ATGTACTCGGAGGTGNTGCGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no448_l13.b1 MSMg01no448_l13.b1 CHROMAT_FILE:
MSMg01no448_l13.b1 PHD_FILE: MSMg01no448_l13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:05 2005
         (192 letters)



>mm_chr7_141479169_141479760
          Length = 592

 Score =  371 bits (192), Expect = e-107
 Identities = 192/192 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggaattttaaaatgtgcttatcagagaaaagtcaaattttctttatcagctcacagagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 aggaattttaaaatgtgcttatcagagaaaagtcaaattttctttatcagctcacagagg 333

                                                                       
Query: 61  aaacaggaaataggagctacttgaagacttctggtgcagagcccttccttcccagccaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 aaacaggaaataggagctacttgaagacttctggtgcagagcccttccttcccagccaga 273

                                                                       
Query: 121 cttcggacactgcgctgggttgccctactgccttgctccatttttaaaagaagtttacgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 cttcggacactgcgctgggttgccctactgccttgctccatttttaaaagaagtttacgt 213

                       
Query: 181 ttttttaggagg 192
           ||||||||||||
Sbjct: 212 ttttttaggagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 192
Length of database: 592
Length adjustment: 8
Effective length of query: 184
Effective length of database: 584
Effective search space:   107456
Effective search space used:   107456
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)