BAC Information

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BAC

Clone NameMSMg01-449G16
Chromosome7 (Build37)
Map Location 105,564,232 - 105,564,475
singlet/doubletsinglet
Overlap genenone
Upstream geneThrsp, Kctd14, Ints4, 1810020D17Rik, Rsf1, LOC622994, LOC100040211, Clns1a, Aqp11, LOC100040594, Pak1, Gdpd4, Myo7a, Capn5, Omp, B3gnt6, Phca, Tsku, LOC100040269
Downstream geneGucy2d, LOC100040721, EG434215, A630091E08Rik, 2210018M11Rik, LOC100040769, Prkrir, Wnt11, LOC666978, Uvrag, EG666529, Dgat2, Mogat2, Mtap6, Serpinh1, Gdpd5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-449G16.T7 (MSMg01no449_g16.b1)MSMg01-449G16.TJ (MSMg01no449_g16.g1)
ACCAG537394AG537395
length744754
length of high quality
(start - end)
269 (332 - 600)244 (83 - 326)
definitionCHROMAT_FILE: MSMg01no449_g16.b1 PHD_FILE: MSMg01no449_g16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:02 2005CHROMAT_FILE: MSMg01no449_g16.g1 PHD_FILE: MSMg01no449_g16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXCTATTTCGAGAGAGCC
GCGGAATTCTTGAGTTTGCATGAATTCTACAGACTCTAGATACCTGGGTT
GGTGACCTTAGCTGCCCAGTTGTATCCCCTAACCAAGGAAGGGAAGATGT
TTGTGTGGACCCCAGATCACCAGAAAGCCTTTAAAGAAATTAAAAAGGCC
CTACTGACAGCCAGCCTTGGCCTTTGCCTGACCCAACCAAGCCCTTCATT
CTTTATGTGTAAGAGAGAGCAAGAGTCGCCAGAGGAGTCCTTGCTCAGAC
TTTGGGACTTTAAAAAAGGCCAGTTGCTTATCTATCCAAGAAGTTAGACC
CTGTTGCTAGTGGGTGGTTTTCTTGCTTGAAAGCTATTGCTGCCATAGCT
CTGCTTGGCAAGATGTTAATAAGCTCACTCTGGGACAGCAAACAACTGTA
GTAGCACCCCACACTCTTGAAAGCATTACCCGAAAGCACCCTGACTGATG
GATGACGAGTTACCCTACTGCCCAAGACTTCACCTACTCATCACTGTGCT
GACATTCTGGCAGAAGAAACTGGTACTCGAAATGATCTGAAGGATCAGAT
CAGCCTTGGCCTGAGAGTTCGAGCTGGTACAAGGATGGCAGTAGCCTCGC
GGGTGAAGACACCTTTTTCATTGTGGGGAGAAGCTTTTTCCACCCAGACT
GAGACAGCCAATGTGATAGCCAAGAAGAACCTAAAAAGAAAACT
TATTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCACATCCAGTATCTCAG
TCCTTTCTTACTCATCTCCCTTGCCACCTCCTGCTTGGCTTTTCTTACAC
CCCATGTCCTGGGGGCTAATTCTTTCCAGATGTCTAATAGCCTAGCCGGC
AGATAGAGGTGTTTGAGGAACGCAGCCCTCTGGGGAAAATCAGCCTAGTA
AGGGGGTTGCTCCCTGGTCAGGACACCAGGGCTGTAAGAGACAGGAAGAG
GCCCAGGCTGCCTCTACAGGGTGGAGGTGTTATATTGCTAGGCTGGAAAG
GGCCCAGAAGACATTACCCATGAGTCATAGCTGTCCCACTACTATTTCAG
CAAAGCAATGTTAGGAAATTGTTAGTCTAGCACATGCCTGCTGACCTTCA
TGGAGCCTGACCAGTGGGGGAAGTGTGAAGGAGACAGACAGGATTCAGGC
TTCTTGGGGCAGGTAAAGGACTTGGGGAAGCTGAGAGTCACTGTTTGCCA
GGCTGGAGGAGGGGAAGGCCTGCGTAGGGGACAGTATGGCTGGTTGGACA
GGAATGTGGAGGTAGTAAGGAGCTTCCCACGTTCTATCATACTAAGACCT
GGAAGGGGTTGTTGTTTATTTTTTTTTTTCCATCTCTCCTGCGGTTTTCC
TTTAACTCTACACACCTTTCCATGCTTCTTGAAATGGTTCTCTCGTCGTC
TTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no449_g16.g1 MSMg01no449_g16.g1 CHROMAT_FILE:
MSMg01no449_g16.g1 PHD_FILE: MSMg01no449_g16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:02 2005
         (244 letters)



>mm_chr7_105564032_105564675
          Length = 644

 Score =  433 bits (224), Expect = e-126
 Identities = 239/244 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccacatccagtatctcagtcctttcttactcatctcccttgccacctcctgcttggcttt 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ccacatccagtatctcaatcctttcttactcatctcccttgccacctcctgcttggcttt 385

                                                                       
Query: 61  tcttacaccccatgtcctgggggctaattctttccagatgtctaatagcctagccggcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tcttacaccccatgtcctgggggctaattctttccagatgtctaatagcctagccggcag 325

                                                                       
Query: 121 atagaggtgtttgaggaacgcagccctctggggaaaatcagcctagtaagggggttgctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 324 atagaggtgtttgaggaacgcagccctctggggaaaatcagcctagtaaggggattgctc 265

                                                                       
Query: 181 cctggtcaggacaccagggctgtaagagacaggaagaggcccaggctgcctctacagggt 240
           |||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 264 cctggtcaggacactaggtctgtaagaaacaggaagaggcccaggctgcctctacagggt 205

               
Query: 241 ggag 244
           ||||
Sbjct: 204 ggag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)