BAC Information

Click to search

BAC

Clone NameMSMg01-449K10
Chromosome7 (Build37)
Map Location 130,004,167 - 130,004,409
singlet/doubletsinglet
Overlap genenone
Upstream geneScnn1b, Cog7, Gga2, Ears2, Ubfd1, Ndufab1, Palb2, Dctn5, Plk1, Ern2, 2010110P09Rik, Prkcb1, LOC668486, Cacng3
Downstream gene4930413G21Rik, Rbbp6, LOC628696, LOC100042977, LOC100042981, Tnrc6a, Slc5a11, Arhgap17, Lcmt1, Aqp8, Zkscan2, LOC100043482
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-449K10.T7 (MSMg01no449_k10.b1)MSMg01-449K10.TJ (MSMg01no449_k10.g1)
ACCAG537571AG537572
length744753
length of high quality
(start - end)
244 (81 - 324)243 (83 - 325)
definitionCHROMAT_FILE: MSMg01no449_k10.b1 PHD_FILE: MSMg01no449_k10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:20 2005CHROMAT_FILE: MSMg01no449_k10.g1 PHD_FILE: MSMg01no449_k10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTTTACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCGACAAAGAG
CCGCGGAATTCACACATGTTTCCACACTTATGTGTGCACATAGTCACACA
TACATATATACACACATAGTCACATGTATACACCCACATGCACACACTAA
CACACATTCACATGCATGCATTCACAGATATGCACATATACTCATATGCA
CATGCATACATAGACACACATGCACACACAGCCTGCATTCACACCTGCAC
AGTCACTTACACACTTCCATATGCTCACATACTCACTCACTCACATACAT
ATTCTTGCACTCACAAGGCACTCACATTTTTGCACATACTCACACATTCA
TACACATGTACATACACACTCACACACATGTATGTGTTACATATATGTGT
TCAAATACACTCTAGCATATATACATGCAATTGCACATGCATTTAGTGCA
TATGACTGTCTGTGCTATCACAGACAATGATGATAACCTGTCATAGCCCT
GAATATTCCCATAACAAGCCTCATTGCATTAACCCACCCAGCCCTTATCT
TATCCCATGACACCCTTTGCTTCCTTGCCATTGTTCAACAAATGGGCAAA
GAAGACTATATGAAGTTGACCTATCCTAAGAACTCTCAGCCTGTCAGCCT
TCCTGGCACAGTTGTCCAGAATGGGGAGCACCAGCATCCCTCACCCTACT
GGGTTGGTTCCAGCCACATACAGCCCGTCCCATGTTCTAAAACN
TTTTCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTTCGAAAAATTCAGCAGATCCTCAAGATGGAT
CTCCTCAAAACCTTTGAAGGCATGCAACACAAAAAAATGTCAGTAGGAGA
ATGTGTGATCCCAAAACTCAGCCTGATAGAAAGAAAAAAAAATCCAGAGC
TTGGCACGATGGCTCAGCAGGTGAAGGCGCTTGCTACCAAGCCAGAGTTC
AGTCCTTGATAGCCACATGGTGGGAGGAGAAAACTGACTTCTGCACATTT
TCCTCTGACTTCTACATGTGTGCTATTGNTTGAAGGCACACACACACACA
CAAACACAGACACACACAGAGACACAGACAGACACACACAGACACTCCCC
CAGACACAAATATCACACATGCATAACACACACACACACACACGCACGCA
CACACACACACACACGCACGCACACACACACACACGCACGCACACACACA
CACATACACACTCCCATATTCTCACAGACATACACACGACACAGACACTC
TTAGACACTTCCCTATACACAAATTACCTCCCATGCATATTCTTACATTC
TCACTCTTACTCTCATATAAACTTTCCCAGACACAAATACCTCTTATGTT
TATAAATATATTTTTTTTCTTTTTCTATACCCAAAAACCACCTTTGTGTT
TTAATCTCCTTCCCATGACCTCCCCTCCCTCTTTAGAAATCTCCCCCTAA
TTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no449_k10.g1 MSMg01no449_k10.g1 CHROMAT_FILE:
MSMg01no449_k10.g1 PHD_FILE: MSMg01no449_k10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:20 2005
         (243 letters)



>mm_chr7_130004089_130004732
          Length = 644

 Score =  431 bits (223), Expect = e-125
 Identities = 238/243 (97%), Gaps = 1/243 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagatcctcaagatggatctcctcaaaacctttgaaggcatgcaacacaaaaaaatgtca 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 cagatcctcaagatggatctcctcaaaacctttgaaggcatgcaacagaaaaaaatgtca 262

                                                                       
Query: 61  gtaggagaatgtgtgatcccaaaactcagcctgatagaaag-aaaaaaaaatccagagct 119
           |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 gtaggagaatgtgtgatccccaaactcagcctgatagaaagaaaaaaaaaatccagagct 202

                                                                       
Query: 120 tggcacgatggctcagcaggtgaaggcgcttgctaccaagccagagttcagtccttgata 179
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 201 tggcacgatggctcagcaggtgaaggcgcttgctaccaagccagagttcagtccttgaga 142

                                                                       
Query: 180 gccacatggtgggaggagaaaactgacttctgcacattttcctctgacttctacatgtgt 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 141 gccacatggtgggaggagaaaactgacttctgcacattttcctctgacttctacatatgt 82

              
Query: 240 gct 242
           |||
Sbjct: 81  gct 79


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 644
Length adjustment: 9
Effective length of query: 234
Effective length of database: 635
Effective search space:   148590
Effective search space used:   148590
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)