BAC Information

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BAC

Clone NameMSMg01-450K15
Chromosome7 (Build37)
Map Location 15,165,439 - 15,165,665
singlet/doubletsinglet
Overlap geneB430211C08Rik
Upstream geneEG666256, LOC666267, LOC100042624, LOC100043194, Sult2a1, EG620627, EG434121, EG629203, LOC677512, EG629219, EG434123, 2810007J24Rik, EG638251
Downstream geneEG194588, LOC666352, EG666312, LOC666365, LOC671978, LOC100042677, LOC100042685, EG666381, LOC100042691, LOC100042702, LOC100042707, LOC100042711, LOC100042714, LOC100042717, LOC100042721, LOC100042728, LOC100042731, LOC100042735, LOC100042739, LOC100042742, LOC235841, EG666407, LOC666337, Obox2, LOC100042753, LOC100042756, LOC100042758, EG545921, LOC100042762, Obox1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450K15.T7 (MSMg01no450_k15.b1)MSMg01-450K15.TJ (MSMg01no450_k15.g1)
ACCAG538339AG538340
length797788
length of high quality
(start - end)
231 (73 - 303)393 (73 - 465)
definitionCHROMAT_FILE: MSMg01no450_k15.b1 PHD_FILE: MSMg01no450_k15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:40 2005CHROMAT_FILE: MSMg01no450_k15.g1 PHD_FILE: MSMg01no450_k15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATCATAATTTGCGGCCGCTAAACGAANTCACATCATTAGCGGAGCCGNG
GNAATCTATCTTACGNAACAAATGGATGAAGGAGAGAACAAGCTATAATA
AGTTCTCATCTGACCCCCCCCCCACACACACACACATGCATATATACACA
GAACAAATAATCGTAACTTTTAAAGTATCTGAAAATACCATTAGCAACTG
ATTCGCCCTCGCCCCTTTGAGGTGGGGGTCTCTCTATGCAGGCCAAGCTT
ACGATCCTTGTGTCCCAGCTTCTTCAGTGTAAGGATTATGGTAGTGTGCT
GCCGCGCCCAGCTTTTCTTTCACTTGATCTTTTCATTTAAAGTTCATTGC
ATACGTGTGTGTGCGCGTGCATGCCTGCATCTCTAGTTGCATCACATGCA
TGCTTGTACCCCCCCCATAGGTCAGGAGAAGGTATCACCGTCTCCTGAAG
CCACATTCACGCTCGTCTGTATTTTATCTTGCCGCGTTTCTCGATATTCT
ATTCACGCTCCGCCCATGCCCTTCACATGCTTTCACTCTCTGATTATTTG
TTTCTGTCATTTCTTGCTTCATTATCTTCTTTTCTTTTCTTCCTCTTTTT
CAACATACCACTCCCTTTACACCCTAATTACATATACCTCCATTCCCCCC
TTCACACTTTATTCTTTTTTGTTGCAAAATATCCCCCCCAATTTTCCTTA
TTCCCTCTTTATTCCGTTCCCTTATCTTCCTTTCCTACTGATCTCCTCCC
AATTCCTCTCTATAATACTTATCCCCCACCACTCATTTGTTCTCCCC
NCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTTTTTTTCAATTAATAATTATTTTTT
ATTGAATATTTTCTTTATTTTTAATTTTTAAACAATTTTTATTAGATATT
TTCTTCATTTACATTTCAAATGCTATCCTAAAAGTCCACTATACCCTCCC
ACTGCCCTGCTCTCCAACCCACTCACTCCTGCTTCTTGGCCCTGGCATTG
CCCTGTACTGGGACATATAAAGTTTGCAAGACCAAGGGGCTCTCTTCCCA
ACGATGGCCAACTAGGCCATCTTGAGAATTCTTTTTTTAGCTCTGTACCC
CATTTTTAATAGGATTATTTGGTTCTCTGAATTCTAACTTCTTGAATTCG
TTGTATATATTACAATTAAGCCCTCTATGAAATATAGGATTGCTAAAGAT
TTAGAGTTGCTTATGTATTCCATTATATCATCTGCAAATAGCGACTTCTT
GACTTCTTCCTTTCCAATTTGTATTCCTCTTCGTTTTTTAACTGTCTCTG
CCTATTACTTCATGTACTACATCTGACAACATAGCGAAGCATGTTTTTCC
TTTGTCCCCTTCTTTATCCCCTCTACCTCTTTCTCTTCCTTCTTCCTCTC
CTTTCCCTTTGCTTCCTCTTTTTTTTCCTTCTTCCTTTCTTCTCTCCGCC
TTTCTTCTTTCTCGCTTTCCTCCTCTTTCATTTTCCCTTTTTCCCCTCTC
CCTCACTTCTTTTTTCCTTCCTCTTCCCTCCCCTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_k15.b1 MSMg01no450_k15.b1 CHROMAT_FILE:
MSMg01no450_k15.b1 PHD_FILE: MSMg01no450_k15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:40 2005
         (231 letters)



>mm_chr7_15165239_15165865
          Length = 627

 Score =  389 bits (201), Expect = e-113
 Identities = 222/231 (96%), Gaps = 4/231 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggatgaaggagagaacaagctataataagttctcatctgaccccccccccacacacaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||
Sbjct: 427 tggatgaaggagagaacaagctataataagttctcatctgaccccccc----cacacaca 372

                                                                       
Query: 61  cacatgcatatatacacagaacaaataatcgtaacttttaaagtatctgaaaataccatt 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 371 cacatgcatatatacacagaacaaataatcataacttttaaagtatctgaaaataccatt 312

                                                                       
Query: 121 agcaactgattcgccctcgcccctttgaggtgggggtctctctatgcaggccaagcttac 180
           ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 agcaactgatttgcccttgcccctttgaggtgggggtctctctatgcaggccaagcttac 252

                                                              
Query: 181 gatccttgtgtcccagcttcttcagtgtaaggattatggtagtgtgctgcc 231
           ||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 251 gatccttgtgtcccagcctcttcagtgtaaggattatgggagtgtgctgcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 627
Length adjustment: 9
Effective length of query: 222
Effective length of database: 618
Effective search space:   137196
Effective search space used:   137196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)