Query= MSMg01no450_p04.b1 MSMg01no450_p04.b1 CHROMAT_FILE:
MSMg01no450_p04.b1 PHD_FILE: MSMg01no450_p04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:02 2005
(542 letters)
>mm_chr7_107230016_107230962
Length = 947
Score = 965 bits (499), Expect = 0.0
Identities = 530/543 (97%), Gaps = 5/543 (0%)
Strand = Plus / Minus
Query: 5 gaattccctattttccctggttatttttgtcatcgcctctagtgatttttgtaaatg--- 61
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct: 747 gaattccctattttcagtggttatttttgtcattgcctctagtgatttttgtaaatggga 688
Query: 62 --ggaaaagtacaaggcaaccatccagtctttaaacaatttgattatggtgggatttcta 119
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 687 atggaaaagtacaaggcaaccatccagtctttaaaaaatttgattatggtgggatttcta 628
Query: 120 ataaagccaaatttgaactggagctctggtgcgagttggagttgtatctttcaagggaga 179
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 ataaaaccaaatttgaattggagctctggtgcgagttggagttgtatctttcaagggaga 568
Query: 180 atgcaaacctgatttctgtatgcaacgtgtatgccacctggattctgggctgcctgcaaa 239
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 atgcaaacctgatttctgtgtgcaacgtgtatgccacctggattctgggctgcctgcaaa 508
Query: 240 gctaagcagacgttgagtggtggcctttctctccaatctatgcagtgctcagccaggtta 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gctaagcagacgttgagtggtggcctttctctccaatctatgcagtgctcagccaggtta 448
Query: 300 ccgatgagttaaattcaagaagctgttttgaagcagagctttaaactgaatgtctgatgg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ccgatgagttaaattcaagaagctgttttgaagcagagctttaaactgaatgtctgatgg 388
Query: 360 gtctgtcacttgacagcctggcggcaggagtacagttatccaaatgctgaccaggaacag 419
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gtctgtcacttgacagcccggcggcaggagtacagttatccaaatgctgaccaggaacag 328
Query: 420 gctggttttcagttatgttgttaaaagcacatacccacgatctgaaatgtttgctatctt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gctggttttcagttatgttgttaaaagcacatacccacgatctgaaatgtttgctatctt 268
Query: 480 catcttttcagtcctgtgggaaatcttagctttagccaaccttacttttcagttcattag 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 catcttttcagtcctgtgggaaatcttagctttagccaaccttacttttcagttcattag 208
Query: 540 gag 542
|||
Sbjct: 207 gag 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 947
Length adjustment: 10
Effective length of query: 532
Effective length of database: 937
Effective search space: 498484
Effective search space used: 498484
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no450_p04.g1 MSMg01no450_p04.g1 CHROMAT_FILE:
MSMg01no450_p04.g1 PHD_FILE: MSMg01no450_p04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:02 2005
(534 letters)
>mm_chr7_107022936_107023870
Length = 935
Score = 922 bits (477), Expect = 0.0
Identities = 513/535 (95%), Gaps = 17/535 (3%)
Strand = Plus / Plus
Query: 1 tgcagcactgaactaggagatattctgaggctgatatctgaccctaacttttccattgta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgcagcactgaactaggagatattctgaggctgatatctgaccctaacttttccattgta 260
Query: 61 tacagtgacacagggcaggcaaaagatgcatagcttaataagtacagattgaatccgaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacagtgacacagggcaggcaaaagatgcatagcttaataagtacagattgaatccgaat 320
Query: 121 catagatccaccattttctagctacagggcctcagacaaggcaccgttcatctcttaacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catagatccaccattttctagctacagggcctcagacaaggcaccgttcatctcttaacc 380
Query: 181 tcattaaaagggggaactaaactctttaactaaagtaatactggaagtaagagctaaact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcattaaaagggggaactaaactctttaactaaagtaatactggaagtaagagctaaact 440
Query: 241 ctttaatacaactaataagtatt-aaaaaaacactatttacattaaagggggttcaattt 299
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctttaacacaactaataagtatttaaaaaaacactatttacattaaagggggttcaattt 500
Query: 300 gggttaaagaaaagtttgttaatatagtcagtacagtctgtgcccaaagtagtgctcaga 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gggttaaagaaaagtttgttaatatagtcagtacagtctgtgcccaaagtagtgctcaga 560
Query: 360 tagtatttggtgaatgaatgaatgaatgaatgaatgaatgaatgaatgaatggctgaatg 419
|||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 561 tagtatttggtgaatgaatgaatgaatgaatgaatg----------------gctgaatg 604
Query: 420 aatgcacacgcaaacaaacagcaagtccatgagagtgcccagggagaaaacactcaacag 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 aatgcacacgcaaacaaacagcaagtccatgagagtgcccagggagaaaacactcaacag 664
Query: 480 aaataactctactcactgcattctgttgggacctcggggaccaactcttgtgtcc 534
||||||||| ||| ||| ||||||||||||||| |||||||||||||||||||||
Sbjct: 665 aaataactccacttactccattctgttgggaccgcggggaccaactcttgtgtcc 719
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 935
Length adjustment: 10
Effective length of query: 524
Effective length of database: 925
Effective search space: 484700
Effective search space used: 484700
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
