Query= MSMg01no451_c19.b1 MSMg01no451_c19.b1 CHROMAT_FILE:
MSMg01no451_c19.b1 PHD_FILE: MSMg01no451_c19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:20 2005
(584 letters)
>mm_chr7_121677716_121678699
Length = 984
Score = 1106 bits (572), Expect = 0.0
Identities = 583/588 (99%), Gaps = 4/588 (0%)
Strand = Plus / Plus
Query: 1 tggtctacagagtgagttccttggtagccaagcctatgtagaggttcttttctcaaaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 tggtctacagagtgagttccttggtagccaagcctatgtagaggttcttttctcaaaata 257
Query: 61 tgaaaaataaataaaaggaaaaaaccctcaagataatactaacagtaaacctaaacagtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tgaaaaataaataaaaggaaaaaaccctcaagataatactaacagtaaacctaaacagtt 317
Query: 121 atatttttagtagctataaacgcatttttctttttgaaattctcagggagatgaagaagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 atatttttagtagctataaacgcatttttctttttgaaattctcagggagatgaagaagc 377
Query: 181 aaccctgggtctacctattagtcccttcatggatcgttcttctcctcaactagcaaaact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 aaccctgggtctacctattagtcccttcatggatcgttcttctcctcaactagcaaaact 437
Query: 241 ccaagaatcttttatcacccacattgtgggccccctgtgcaactcctatgatgctgctgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ccaagaatcttttatcacccacattgtgggccccctgtgcaactcctatgatgctgctgg 497
Query: 301 cttgctgccgggtcagtggatagaaacagaagagggtgatgatacagaaagtgatgatga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 cttgctgccgggtcagtggatagaaacagaagagggtgatgatacagaaagtgatgatga 557
Query: 361 tgatgatgatgatgatggtggtg---aagaattagattcagatgatgaagaaacagaaga 417
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 558 tgatgatgatgatgatggtggtggtgaagaattagattcagatgatgaagaaacagaaga 617
Query: 418 caatctaaatcctagtaaggaaactatgttttgtttattgctactaattacaaatgttca 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 caatctaaatcctagtaaggaaactatgttttgtttattgctactaattacaaatgttca 677
Query: 478 cttaatttggatttagattttttttttttagtatttttttt-aattagttattttcctcg 536
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 678 cttaatttggatttagattttttttttttagtatttttttttaattaggtattttcctcg 737
Query: 537 tttacattttcaatgctatcccgaaggggatttagatttttacatctt 584
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 tttacattttcaatgctatcccgaaggggatttagatttttacatctt 785
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space: 559076
Effective search space used: 559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no451_c19.g1 MSMg01no451_c19.g1 CHROMAT_FILE:
MSMg01no451_c19.g1 PHD_FILE: MSMg01no451_c19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:20 2005
(613 letters)
>mm_chr7_121822867_121823879
Length = 1013
Score = 832 bits (430), Expect = 0.0
Identities = 451/460 (98%), Gaps = 4/460 (0%)
Strand = Plus / Minus
Query: 158 gagatcatcagtctaggtgttcaacgatagctgagcatgcaaagaaaatatgat----ac 213
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1013 gagatcatcagtctaggtgttcaacgatagctgagcatgcaaagaaaatatgatacacac 954
Query: 214 acactcagtggtattttattcatccatgaagaagaattaaattgtaatttgcaggaaaat 273
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 953 acacacagtggtattttattcatccataaagaagaattaaattgtaatttgcaggaaaat 894
Query: 274 aaatggaatcagagtgcatcatgataagcaaaataagctagattctcaaagagaaatatt 333
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 893 aaatggaatcagaatgcatcatgataagcaaaataagctagattctcaaagagaaatatt 834
Query: 334 gtacacttaccttcacatgtaaactttaaagggaacaagacatgaaagaaaaggtgtgct 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 gtacacttaccttcacatgtaaactttaaagggaacaagacatgaaagaaaaggtgtgct 774
Query: 394 attgctactgtgtaacaggtgcctggaaggggtagaacagaaagatgcgttgggaggaca 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 attgctactgtgtaacaggtgcctggaaggggtagaacagaaagatgcgttgggaggaca 714
Query: 454 aatataatcaaagcatgttaaaatatgtatgaaaatgtcattatgaaattcattagtttc 513
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 aacataatcaaagcatgttaaaatatgtatgaaaatgtcattatgaaattcattagtttc 654
Query: 514 tacaattactatatgctatttaaaaatcaagcatcctttctcaaacaggcaaggaaagga 573
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 653 tacaattactatatgctatttaaaaatcaagcatccttgctcaaacaggcaaggaaagga 594
Query: 574 aaggaaatgtgtcagttaagagcaaaagattgctaagttg 613
||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 aaggaaatgtgtcagttaagagcaaaagattgctaagttg 554
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space: 604809
Effective search space used: 604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
