BAC Information

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BAC

Clone NameMSMg01-452F15
Chromosome7 (Build37)
Map Location 94,989,129 - 95,178,410
singlet/doubletdoublet
Overlap geneGrm5
Upstream geneVmn2r-ps87, LOC637896, EG621430, LOC621477, Nox4, Tyr
Downstream geneCtsc, LOC100039756, Rab38, LOC100039924, LOC666598, EG621562
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-452F15.T7 (MSMg01no452_f15.b1)MSMg01-452F15.TJ (MSMg01no452_f15.g1)
ACCAG539624AG539625
length765758
length of high quality
(start - end)		679 (50 - 728)602 (76 - 677)
definitionCHROMAT_FILE: MSMg01no452_f15.b1 PHD_FILE: MSMg01no452_f15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:53 2005CHROMAT_FILE: MSMg01no452_f15.g1 PHD_FILE: MSMg01no452_f15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,177,736 - 95,178,410)(94,989,129 - 94,989,730)
sequence
NGGCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCTTTAATCCCGTGTAGAGGAAACTTTAACATCACAAAACCT
AATATAATTCCTGAAGATACATTACTCAAAATATATGCTTATTTTACTTT
GATCTGGTGAATTGTGGGGCTGATGTATAAGGTGAGGTGTTGAAACCTAG
AACACTGAACACCTTAAGAGTCATTTTTTATACTATTGCTTTGGGTAAGC
CAGCCATTCTAGTGTGTGTGTGTGTGTCTCTGTGTGTGTGTCTGTCTGTG
TATTGTAGTTCGGTTGGTCCATGGGCTTCCACAAAAATTCTTTCTCTACT
TCCCACAGTTGGATTTTTGCAGTTATTGATAGATCTTACCATGTTAAGCT
CTATGTGCATTCTGGAAATTTGACCTCATGTCTTCACACTAGCTTATGTT
CTGTAACACTTTGACATCTTCCTAACCAACCCAAATTTACCCTTTGTAAA
CTTTACTTTGTATTAATAAAAAGGAGGACAGAAGATTGCTTATTTCATAT
AACTTAAAAAGTGAGCATTTAGCTTAGTATTTGTTTTGAATTACACACAA
TGACAAAAATATTAGTTAAACATTGCAGGTGGGTAGTTAAACATTGCAGG
TGCACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGAT
ATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAATTTGCTAAAC
ACATGAAACTCAAGN

NACGATGCTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCTGACTATTTGTATTTATTTCAGT
TTTGGCTGTGTGTGTGGATGTAAGTAGGTGGGCGCACACACATGGATGTC
AGTGGTGTGGAAGCCTAAGGTGTCAGATTCCTTGGAGTTATGGGCACTTA
GCTACCACTCAATATGCGTACAAGGAACCAAACTTGGGTCCTTTGTAAGA
GATCTTAGCTTAGCCATCTTGCCAGTCCCAAAATAGTAATTTTAAAATGG
CATACTTAGGTCTTTTCACTGTGTAATATCATTCCTGTGTCCAGTTGTCT
CATCATCATATACATTAGGTAAAGTAGCTTCTTTAATTCATTTATTTATT
AAATATTGGTTTGTGCTCACTATGTTCTGGGCAATGTAATTGACACTTAG
CATTAATAGTGAGCAAAATAGTCTTTCTTTCAGCTACATAATTACCGAGT
GTAGACAAATAAGAGTTTTGTATTCTTTGGCAAGTAATCAGTCAACATTA
GACAGCAATACCATTGAATTACAAACTATTATAAAACTAGTTTTGATGAT
TAGGAACAGGTTTTATATAGCAATATATACCTATCAAGAAAATTATACAG
TTAAAAAAAAAAGTAGTGTCTGAACTTAGGCATGCTAGACAGAAAAGTGC
TAGAGAATCAAGACATTTTATGAGATTCAAATTCATTTTCAAATATAAGT
GTAGGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no452_f15.b1 MSMg01no452_f15.b1 CHROMAT_FILE:
MSMg01no452_f15.b1 PHD_FILE: MSMg01no452_f15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:53 2005
         (679 letters)



>mm_chr7_95177360_95178438
          Length = 1079

 Score = 1297 bits (671), Expect = 0.0
 Identities = 674/675 (99%)
 Strand = Plus / Minus

                                                                        
Query: 5    gaattcctttaatcccgtgtagaggaaactttaacatcacaaaacctaatataattcctg 64
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1051 gaattcctttaatccagtgtagaggaaactttaacatcacaaaacctaatataattcctg 992

                                                                        
Query: 65   aagatacattactcaaaatatatgcttattttactttgatctggtgaattgtggggctga 124
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 991  aagatacattactcaaaatatatgcttattttactttgatctggtgaattgtggggctga 932

                                                                        
Query: 125  tgtataaggtgaggtgttgaaacctagaacactgaacaccttaagagtcattttttatac 184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 931  tgtataaggtgaggtgttgaaacctagaacactgaacaccttaagagtcattttttatac 872

                                                                        
Query: 185  tattgctttgggtaagccagccattctagtgtgtgtgtgtgtgtctctgtgtgtgtgtct 244
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 871  tattgctttgggtaagccagccattctagtgtgtgtgtgtgtgtctctgtgtgtgtgtct 812

                                                                        
Query: 245  gtctgtgtattgtagttcggttggtccatgggcttccacaaaaattctttctctacttcc 304
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811  gtctgtgtattgtagttcggttggtccatgggcttccacaaaaattctttctctacttcc 752

                                                                        
Query: 305  cacagttggatttttgcagttattgatagatcttaccatgttaagctctatgtgcattct 364
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751  cacagttggatttttgcagttattgatagatcttaccatgttaagctctatgtgcattct 692

                                                                        
Query: 365  ggaaatttgacctcatgtcttcacactagcttatgttctgtaacactttgacatcttcct 424
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691  ggaaatttgacctcatgtcttcacactagcttatgttctgtaacactttgacatcttcct 632

                                                                        
Query: 425  aaccaacccaaatttaccctttgtaaactttactttgtattaataaaaaggaggacagaa 484
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631  aaccaacccaaatttaccctttgtaaactttactttgtattaataaaaaggaggacagaa 572

                                                                        
Query: 485  gattgcttatttcatataacttaaaaagtgagcatttagcttagtatttgttttgaatta 544
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571  gattgcttatttcatataacttaaaaagtgagcatttagcttagtatttgttttgaatta 512

                                                                        
Query: 545  cacacaatgacaaaaatattagttaaacattgcaggtgggtagttaaacattgcaggtgc 604
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511  cacacaatgacaaaaatattagttaaacattgcaggtgggtagttaaacattgcaggtgc 452

                                                                        
Query: 605  acattcacaaaggaactcacacaatatgtactcactgataagtggatattagcccaaaac 664
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451  acattcacaaaggaactcacacaatatgtactcactgataagtggatattagcccaaaac 392

                           
Query: 665  ctaggatacccaaga 679
            |||||||||||||||
Sbjct: 391  ctaggatacccaaga 377


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1079
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1069
Effective search space:   715161
Effective search space used:   715161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no452_f15.g1 MSMg01no452_f15.g1 CHROMAT_FILE:
MSMg01no452_f15.g1 PHD_FILE: MSMg01no452_f15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:53 2005
         (602 letters)



>mm_chr7_94988929_94989930
          Length = 1002

 Score = 1156 bits (598), Expect = 0.0
 Identities = 601/602 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctgactatttgtatttatttcagttttggctgtgtgtgtggatgtaagtaggtgggcgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctgactatttgtatttatttcagttttggctgtgtgtgtggatgtaagtaggtgggcgc 260

                                                                       
Query: 61  acacacatggatgtcagtggtgtggaagcctaaggtgtcagattccttggagttatgggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acacacatggatgtcagtggtgtggaagcctaaggtgtcagattccttggagttatgggc 320

                                                                       
Query: 121 acttagctaccactcaatatgcgtacaaggaaccaaacttgggtcctttgtaagagatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acttagctaccactcaatatgcgtacaaggaaccaaacttgggtcctttgtaagagatct 380

                                                                       
Query: 181 tagcttagccatcttgccagtcccaaaatagtaattttaaaatggcatacttaggtcttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagcttagccatcttgccagtcccaaaatagtaattttaaaatggcatacttaggtcttt 440

                                                                       
Query: 241 tcactgtgtaatatcattcctgtgtccagttgtctcatcatcatatacattaggtaaagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcactgtgtaatatcattcctgtgtccagttgtctcatcatcatatacattaggtaaagt 500

                                                                       
Query: 301 agcttctttaattcatttatttattaaatattggtttgtgctcactatgttctgggcaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agcttctttaattcatttatttattaaatattggtttgtgctcactatgttctgggcaat 560

                                                                       
Query: 361 gtaattgacacttagcattaatagtgagcaaaatagtctttctttcagctacataattac 420
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtaattgacacttagcattaatggtgagcaaaatagtctttctttcagctacataattac 620

                                                                       
Query: 421 cgagtgtagacaaataagagttttgtattctttggcaagtaatcagtcaacattagacag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cgagtgtagacaaataagagttttgtattctttggcaagtaatcagtcaacattagacag 680

                                                                       
Query: 481 caataccattgaattacaaactattataaaactagttttgatgattaggaacaggtttta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 caataccattgaattacaaactattataaaactagttttgatgattaggaacaggtttta 740

                                                                       
Query: 541 tatagcaatatatacctatcaagaaaattatacagttaaaaaaaaaagtagtgtctgaac 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tatagcaatatatacctatcaagaaaattatacagttaaaaaaaaaagtagtgtctgaac 800

             
Query: 601 tt 602
           ||
Sbjct: 801 tt 802


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1002
Length adjustment: 10
Effective length of query: 592
Effective length of database: 992
Effective search space:   587264
Effective search space used:   587264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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