BAC Information

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BAC

Clone NameMSMg01-452F18
Chromosome7 (Build37)
Map Location 111,590,162 - 111,590,850
singlet/doubletsinglet
Overlap geneTrim30
Upstream geneOlfr605, Olfr606, EG546989, Olfr608, Olfr609, Olfr610, Olfr611, EG545985, Olfr614, Olfr615, Olfr616, LOC100042167, Olfr617, Olfr618, Olfr619, Olfr620, LOC667639, Olfr622, Olfr623, Olfr624, Olfr625-ps1, Olfr261-ps1, Olfr260-ps1, Olfr627, Olfr1526-ps1, Olfr629, Olfr630, Olfr69, Olfr68, Olfr67, Hbb-b1, EG436003, Hbb-bh1, Hbb-y, Olfr66, Olfr64, Olfr65, Olfr631, Olfr632, Olfr633, Olfr634-ps1, LOC233614, Olfr635, Olfr636-ps1, Olfr637-ps1, Olfr638, Olfr639, Olfr640, Olfr641, Olfr642, Olfr643, Olfr644, Olfr645, Olfr646, 4931431F19Rik, Ubqln3, Ubqlnl, E030002O03Rik, Olfr647-ps1, Olfr648, Olfr649, Olfr650-ps1, Trim6, LOC667497, EG667823, Trim12, Trim34, 9230105E10Rik, A530023O14Rik, EG434219, LOC100041595
Downstream geneAI451617, LOC672495, LOC625305, EG625321, Olfr651, Olfr652, Olfr653, Olfr654, Olfr655, Olfr656, Olfr657, Olfr658, LOC667882, Olfr659, GA_x5J8B7W3SPQ-80592-80214, Olfr661, LOC625495, Olfr662-ps1, Olfr663, Olfr664, EG625530, LOC100042613, LOC233637, Dub1a, Dub1, Olfr665, Olfr666, Olfr667, Olfr668, Olfr669, EG545987, Olfr670, Olfr671, Olfr672, GA_x5J8B7W6B6J-189947-189022, Olfr674-ps1, Olfr675, Olfr676, Olfr677, LOC667987, Olfr678, Olfr679, Olfr680-ps1, Olfr681, Olfr682-ps1, Olfr683, Olfr684, Olfr685, Olfr686, EG668035, Olfr688, Olfr689, Olfr690, Olfr691, Olfr692, EG545989, 4632419K20Rik, Cnga4, EG244189, Cckbr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-452F18.T7 (MSMg01no452_f18.b1)MSMg01-452F18.TJ (MSMg01no452_f18.g1)
ACCAG539630AG539631
length780773
length of high quality
(start - end)		659 (47 - 705)692 (75 - 766)
definitionCHROMAT_FILE: MSMg01no452_f18.b1 PHD_FILE: MSMg01no452_f18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:53 2005CHROMAT_FILE: MSMg01no452_f18.g1 PHD_FILE: MSMg01no452_f18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATTCTTTTTAATAGCTGAGTAGTACTCCATTGTGTAAATGTACC
ACATTTTCTGTATCCATTCCTCTGTTGAGGGACATCTGGGTTCTTTCCAG
CTTCTGACTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTC
CTTCTTACCGGTTGGGACATCTTCTGGATATATGCCCAGGAGAGGTATTG
CAGAATCCTCCGGTAGTACTATGTCCAATTTTCTGAGGAACCGCCAGACT
GATTGCCAGACTGGTTGTACAAGCTTGCAATCCCACCAACAATGGAGGAG
TGTTCCTCTTTCTCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTTT
TGATCTTAGCCATTCTGACTGGTGTGAGATGGAATCTCAGGGTTGTTTTG
GTTTGCATTTCTCTGATGATTAAGGATGGTGAACATATTTTCAGGTGTTT
CTCAGCCTTTCGGTATTCCTCGGGTGAGAATCCTTTGTTCACCTCTGAGC
CCCATCATTTAAGGGGGTTATTTGATTTTCTGGAGTCCACCCTCTTGAGT
TCTTTATATATATTGGATATTAGTCCCCTATCTGATTTAAGATAGGTAAA
GGTCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTTATTGACGGNATCTT
TTGCCTTGCAGAAGCTTTGCAATTTCATGAGGTCCCATTTTGTCATCCTC
GATCTTTAAGCACAAGCCATTGCTGTTCTA

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTATCTCTGTACCCCATTTTT
AATATGGTTATTTGTTTCTCTGGAGTTTAACTTCTTGAGTACTTTGTATA
TATTGGATATTAGCCCTCTATGGAATTTAGAGTTGGTAAAGATCTTTTAC
CAATCTGTAGGTTGCCATATTGTCCTATTCAGAGTGTCCTTTGCCTTACA
CTTGTCCATTCTTCATCTACTGTTCAGGAAAGTTTCCCCTGTGCCCATGT
GCTTGAGGCTCTTCCCACATTTTTTCTATTACTTTCAGTGAAACTATCAT
CATTCTTAAAGAAACAGTTTTAGGTGTTACAGAGTTCAACTACACAGGGA
GAAGACCACAGATTAAGTTAAAATGAAGTGAATTCATAAAATATTGCTAA
TAGCTCAGTGGCCTTAAAGGCAAATCAAAGAATTGTGACACAGGAAGAGG
CTAGAGGAAGTGTATTTAAAGGTGGACACCACAATCAACTTATTTGTCTG
GGATGTGTAGCTGAGAATAAATAACTCAGCAATAAAGTTCACAAAACCAG
CATGAGTTTTACATTTGGGGAGGACAGCAAGGAGTGAGAGTTTTGAGGAA
CTTATCTTTCAGGAATTTCAAATGAGTGCCTAGCACAAAATGGAGCTTCC
TTGGCCATTACATAACAGAAACAAGTGCTGTCTGAAGTCTTTTTTGATTT
GAACAAACCTAGTTATTGTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no452_f18.g1 MSMg01no452_f18.g1 CHROMAT_FILE:
MSMg01no452_f18.g1 PHD_FILE: MSMg01no452_f18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:53 2005
         (692 letters)



>mm_chr7_111589759_111590850
          Length = 1092

 Score = 1201 bits (621), Expect = 0.0
 Identities = 667/689 (96%), Gaps = 11/689 (1%)
 Strand = Plus / Minus

                                                                        
Query: 15   taccccatttttaatatggttatttgtttctctggagtttaacttcttgagtactttgta 74
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1092 taccccatttttaatatggttatttgtttctctggagtctaacttcttgagtactttgta 1033

                                                                        
Query: 75   tatattggatattagccctctatggaatttagagttggtaaagatcttttaccaatctgt 134
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1032 tatattggatattagccctctatggaatgtagagttggtaaagatcttttaccaatctgt 973

                                                                        
Query: 135  aggttgccatattgtcctattcagagtgtcctttgccttacacttgtccattcttcatct 194
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 972  aggttgccatattgtcctattcagagtgtcctttgccttacatttgtccattcttcatct 913

                                                                        
Query: 195  actgttcaggaaagtttcccctgtgcccatgtgcttgaggctcttcccacattttttcta 254
            ||||||||||||||||||||||||| ||||| |||||||||||||||| | |||||||||
Sbjct: 912  actgttcaggaaagtttcccctgtgtccatgagcttgaggctcttccccctttttttcta 853

                                                                        
Query: 255  ttactttcagtgaaactatcatcattcttaaagaaacagttttaggtgttacagagttca 314
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 852  ttactttcagtgaaactatcatcattcttaaagtaacagttttaggtgttacagagttca 793

                                                                        
Query: 315  actacacagggagaagaccacagattaagttaaaatgaagtgaattcataaaatattgct 374
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 792  actacacagggagaagaccacagattaagttataatgaagtgaattcataaaatattgct 733

                                                                        
Query: 375  aatagctcagtggccttaaaggcaaatcaaagaattgtgacacaggaagaggctagagga 434
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 732  aatagctcagtggccttaaaggcaaatcaaagaattgtgacacaggaagaggctagaggg 673

                                                                        
Query: 435  agtgtatttaaaggtggacaccacaatcaacttatttgtctgggatgtgtagctgagaat 494
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672  agtgtatttaaaggtggacaccacaatcaacttatttgtctgggatgtgtagctgagaat 613

                                                                        
Query: 495  aaataactcagcaataaagttcacaaaaccagcatgagttttacatttggggaggacagc 554
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612  aaataactcagcaataaagttcacaaaaccagcatgagttttacatttggggaggacagc 553

                                                                        
Query: 555  aaggagtgagagttttgaggaacttatctttcaggaatttcaaatgagtgcctagcacaa 614
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 552  aaggagtgagagttttgaggaacttatttttcaggaatttcaaatgagtgcctagcacaa 493

                                                                        
Query: 615  aatggagcttccttggccattacat-----------aacagaaacaagtgctgtctgaag 663
            |||||||||||||||||||||||||           ||||||||||||||||||||||||
Sbjct: 492  aatggagcttccttggccattacatactccaataacaacagaaacaagtgctgtctgaag 433

                                         
Query: 664  tcttttttgatttgaacaaacctagttat 692
            |||||||||||||||||||||||||||||
Sbjct: 432  tcttttttgatttgaacaaacctagttat 404


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1092
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1082
Effective search space:   737924
Effective search space used:   737924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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