Query= MSMg01no452_j15.b1 MSMg01no452_j15.b1 CHROMAT_FILE:
MSMg01no452_j15.b1 PHD_FILE: MSMg01no452_j15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:12 2005
(674 letters)
>mm_chr7_82316739_82317813
Length = 1075
Score = 1187 bits (614), Expect = 0.0
Identities = 656/670 (97%), Gaps = 1/670 (0%)
Strand = Plus / Plus
Query: 6 gaattcttttct-tatctggtggaaatccaagcatacagtcaggagatccatcagtgccc 64
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcttttcaatatctggtggaaatccaagcatacagtcaggagatccatcagtgccc 265
Query: 65 ccaaattatggaatagcctgtgagaaaacagtactatggagcagatgagggctgggtgag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ccaaattatggaatagcctgtgagaaaacagtactatggagcagatgagggctgggtgag 325
Query: 125 acccttgtcatcctgtctgagaatgaagcctagtcgctcaccaccagctcttcagttcca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 acccttgtcatcctgtctgagaatgaagcctagtcgctcaccaccagctcttcagttcca 385
Query: 185 cttaagacacagctccatgaataagcaaagctaagcctcatggaacattgaagctctcag 244
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 386 gttaagacacagctccatgaataagcaaagctaagcctcatggaacatcgaagctctcag 445
Query: 245 tgtggtcaacaaggccagaggtgtgcaggcagtgagtctgagagtaagatgccccttgcg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tgtggtcaacaaggccagaggtgtgcaggcagtgagtctgagagtaagatgccccttgcg 505
Query: 305 tcctcaccatagtgccaggacagaccttttagctggaatcgataggaggctaatgaccct 364
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 506 tcctcaccatagtgccaggacagaccttttagccggaatcgataggaggctaatgaccct 565
Query: 365 ataagacaacctggagaattcatcatcctagaagatggataacccacctccaacctcagg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ataagacaacctggagaattcatcatcctagaagatggataacccacctccaacctcagg 625
Query: 425 gaaacctcctgctgagcagtgttctgtgagcagaccgtgtctccagatctatggccatgt 484
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 626 gaaacctcctgctgagcagtgttctgtgagcagaccgagtctccagatccatggccatgt 685
Query: 485 ctgtggttagcagaggcacactgtcagccatgctaggagcaactgtaacatatatgatac 544
|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
Sbjct: 686 ctgtggttagcagaggcacactgttagccatggtaggagcaactgtaacatatatgatgc 745
Query: 545 agaaaccctaagttaggctttaaccagggcttaccctagccctggacttagggatcttct 604
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 746 agaaaccctaagttaggctttaaccagggcttaccctagccctggacttagggatcatct 805
Query: 605 ttaattttctttggcattgaaaataagaagcatattacccagagaatattccctggagac 664
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct: 806 ttaattttcttttgcattgaaaataagaagcatattccccagagaatattccctgaagac 865
Query: 665 actgcaggaa 674
||||||||||
Sbjct: 866 actgcaggaa 875
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1075
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1065
Effective search space: 707160
Effective search space used: 707160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no452_j15.g1 MSMg01no452_j15.g1 CHROMAT_FILE:
MSMg01no452_j15.g1 PHD_FILE: MSMg01no452_j15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:12 2005
(589 letters)
>mm_chr7_82440911_82441900
Length = 990
Score = 1125 bits (582), Expect = 0.0
Identities = 588/590 (99%), Gaps = 1/590 (0%)
Strand = Plus / Minus
Query: 1 ctggcttgaaattctctactttgtactgccctggacttctgtgaaggagttaggtcaaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 ctggcttgaaattctctactttgtactgccctggacttctgtgaaggagttaggtcaaga 731
Query: 61 accattgctgagtgagcagagcagtgactctatgggaagagccttcactggtgtgaatcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 accattgctgagtgagcagagcagtgactctatgggaagagccttcactggtgtgaatcc 671
Query: 121 cttactgtgttctagcaacgtctcagtatgttgatgaacaatctaggcggctgcctcact 180
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 670 cttactgtgttctagcaacgtctcagtatgtcgatgaacaatctaggcggctgcctcact 611
Query: 181 aatagataagctgtttggaagcacacagaagggacaacctccaccatga-tttttttttc 239
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 610 aatagataagctgtttggaagcacacagaagggacaacctccaccatgattttttttttc 551
Query: 240 taggtttgttgtgattaagattcatctctgggctaagaaaactctgcctggcctagttgg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 taggtttgttgtgattaagattcatctctgggctaagaaaactctgcctggcctagttgg 491
Query: 300 gacccacacctacaccaaaatgtcaaaatgtgaaaagcccaaattgcctgtggtgagaat 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 gacccacacctacaccaaaatgtcaaaatgtgaaaagcccaaattgcctgtggtgagaat 431
Query: 360 agggggggacgttcttcaaaggaagctacctaagaagagcacatggttgctaggtaggca 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 agggggggacgttcttcaaaggaagctacctaagaagagcacatggttgctaggtaggca 371
Query: 420 aaccccacagatatttgccacactgagcagactccttcagctgcagtaaagttcatggaa 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaccccacagatatttgccacactgagcagactccttcagctgcagtaaagttcatggaa 311
Query: 480 cattagcttcgtgggagagcatcgtagccttccagagtctggccattttctccagctctc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 cattagcttcgtgggagagcatcgtagccttccagagtctggccattttctccagctctc 251
Query: 540 ctccattacttaggagctgaagtgttcacagctatcttgcttactctagg 589
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 ctccattacttaggagctgaagtgttcacagctatcttgcttactctagg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 990
Length adjustment: 10
Effective length of query: 579
Effective length of database: 980
Effective search space: 567420
Effective search space used: 567420
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
