BAC Information

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BAC

Clone NameMSMg01-452M20
Chromosome7 (Build37)
Map Location 93,814,718 - 93,890,247
singlet/doubletdoublet
Overlap geneOlfr292, Folh1
Upstream geneVmn2r-ps74, EG244114, EG620928, EG546980, LOC666382, LOC637652, LOC637667, EG666418, LOC100039471, EG546981, Vmn2r-ps86, Vmn2r76, Olfr310, Olfr309, Olfr308, Olfr307, Olfr306-ps1, Olfr305, Olfr304, Olfr303, Olfr301, Olfr1531-ps1, Olfr300-ps1, Olfr299, Olfr298, Olfr297, Olfr296-ps1, Olfr295, Olfr294, Olfr293
Downstream geneEG546983, Vmn2r-ps87, LOC637896, EG621430, LOC621477, Nox4, Tyr, Grm5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-452M20.T7 (MSMg01no452_m20.b1)MSMg01-452M20.TJ (MSMg01no452_m20.g1)
ACCAG539967AG539968
length769760
length of high quality
(start - end)		604 (47 - 650)645 (76 - 720)
definitionCHROMAT_FILE: MSMg01no452_m20.b1 PHD_FILE: MSMg01no452_m20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:28 2005CHROMAT_FILE: MSMg01no452_m20.g1 PHD_FILE: MSMg01no452_m20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,889,649 - 93,890,247)(93,814,718 - 93,815,362)
sequence
NTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTATTGGTACCTAGATTTCACTAATTATTGGAGAACCGACATTCTCT
CCTCTGACCACCACTTACATGAGATGACATGCATGTTCACAAAACACACA
TACAGGCACTAAATACATAAATATGTTAATAAAAATATAATTTGTTTTAA
AAAATCAACAAAATTATCTCACTTGAAGAATTCACTTCTGTTCCAATTTT
AGAAACACCTCATTTCAATTATTGAGATTTAATTTTGTTTTAGATAATGT
AATATAATAAATAAATCAGTGTACTGGAATCAAAATACAAAGCCAAAACA
AAACAACCAAACAAAAAATTGGCAATTTCTTTTTTAAATTAAATTTATTA
TTCACTCTACATGCTGATATCAGTCCCCTCTCTCTTCCCACTATTCCCTC
ACAGAGAAACTCCTCCTATTATTCCCTTCCCTTCTCCGTTAAGAAGGAGG
AGCTCCCTCTTGATATAAACCCTATATTGCCACCCCTGTACCACCCTAGC
ACATTAATTCTCTTTAGGACTAGGCAGATCTTCTCCCACTGAGGCCAGAT
AAAATGGCGCATTTAGGGGAATGAGATCCACATGCAGGCAGGAAACAAAT
TCAGGGAGAGCCCCTTCTGTTGTTGGGGGGCCCTGACATGAAGAGGAAGC
TTTTCATCTGATGTATAAACACCACACACCAATATATATATACACACACA
TGCATATATATATATATAT

ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTTTACATTGTCTCTTTGTGTATAT
ATATTTTAAGAATAGTCTATTGAATTAGATTTCCGTAATACTCTTCCAAA
GGTCCTCATTTTTAGGTCTGTCTTCCCATAATCCCTCTCTTTTCATTTTT
TTCTCTATCAAGTCACTTAATCCTCCCACGCCAATCCCTCAATCCACCAT
TCACTGTTTGTTCATTTCATTTTTTAAATATTCTTTGCCTGTCCCCACCT
ACTCCCTTACCTATATAAGTGAATCTATAAAAGATTAGTCTTTCTGGTTC
TGGATTACTCCAATCAGGATGATATTTTTCTAGTTCTGTGAAATTACCTG
TTTCATTTCATTATTTCACTTTTAAATTTTATATCTTTATTCTTCTTTTA
TACAATACATTTCAACTGCATCCTTTCCTTATTCCTAATTTTCACTATAT
ACCCCCTCCCCCAGACCAACCTTTATTTCATTTTGCTTCAAAAAAGATCA
ACTCTCTCAGTGAAATTAATTGTAGTTGCCATAATATGATACAATAATAT
GATGCATATAACCTCATATGATGGCTCGACAAAGAAACCTAAAAGGAGGA
AAAAGATACCACAAGCAGACAAAAGAATCAGGGATACCCCCACTCCCATC
ATTAGGAATCATTTTTAACAGTTGACTAATATCTTATTGTATAAAAAAAT
TATATTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no452_m20.b1 MSMg01no452_m20.b1 CHROMAT_FILE:
MSMg01no452_m20.b1 PHD_FILE: MSMg01no452_m20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:28 2005
         (604 letters)



>mm_chr7_93889561_93890564
          Length = 1004

 Score = 1151 bits (595), Expect = 0.0
 Identities = 598/599 (99%)
 Strand = Plus / Minus

                                                                       
Query: 6   aattattggtacctagatttcactaattattggagaaccgacattctctcctctgaccac 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 aattattggtacctagatttcactaattattggagaaccgacattctctcctctgaccac 628

                                                                       
Query: 66  cacttacatgagatgacatgcatgttcacaaaacacacatacaggcactaaatacataaa 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 cacttacatgagatgacatgcatgttcacaaaacacacatacaggcactaaatacataaa 568

                                                                       
Query: 126 tatgttaataaaaatataatttgttttaaaaaatcaacaaaattatctcacttgaagaat 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 tatgttaataaaaatataatttgttttaaaaaatcaacaaaattatctcacttgaagaat 508

                                                                       
Query: 186 tcacttctgttccaattttagaaacacctcatttcaattattgagatttaattttgtttt 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 tcacttctgttccaattttagaaacacctcatttcaattattgagatttaattttgtttt 448

                                                                       
Query: 246 agataatgtaatataataaataaatcagtgtactggaatcaaaatacaaagccaaaacaa 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 agataatgtaatataataaataaatcagtgtactggaatcaaaatacaaagccaaaacaa 388

                                                                       
Query: 306 aacaaccaaacaaaaaattggcaatttcttttttaaattaaatttattattcactctaca 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 aacaaccaaacaaaaaattggcaatttcttttttaaattaaatttattattcactctaca 328

                                                                       
Query: 366 tgctgatatcagtcccctctctcttcccactattccctcacagagaaactcctcctatta 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tgctgatatcagtcccctctctcttcccactattccctcacagagaaactcctcctatta 268

                                                                       
Query: 426 ttcccttcccttctccgttaagaaggaggagctccctcttgatataaaccctatattgcc 485
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 267 ttcccttcccttctccgttaagaaggaggagctccctcttgatataaaccctatattgtc 208

                                                                       
Query: 486 acccctgtaccaccctagcacattaattctctttaggactaggcagatcttctcccactg 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 acccctgtaccaccctagcacattaattctctttaggactaggcagatcttctcccactg 148

                                                                      
Query: 546 aggccagataaaatggcgcatttaggggaatgagatccacatgcaggcaggaaacaaat 604
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 aggccagataaaatggcgcatttaggggaatgagatccacatgcaggcaggaaacaaat 89


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space:   590436
Effective search space used:   590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no452_m20.g1 MSMg01no452_m20.g1 CHROMAT_FILE:
MSMg01no452_m20.g1 PHD_FILE: MSMg01no452_m20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:28 2005
         (645 letters)



>mm_chr7_93814518_93815562
          Length = 1045

 Score = 1224 bits (633), Expect = 0.0
 Identities = 642/645 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttacattgtctctttgtgtatatatattttaagaatagtctattgaattagatttccg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctttacattgtctctttgtgtatatatattttaagaatagtctattgaattagatttccg 260

                                                                       
Query: 61  taatactcttccaaaggtcctcatttttaggtctgtcttcccataatccctctcttttca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taatactcttccaaaggtcctcatttttaggtctgtcttcccataatccctctcttttca 320

                                                                       
Query: 121 tttttttctctatcaagtcacttaatcctcccacgccaatccctcaatccaccattcact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttttttctctatcaagtcacttaatcctcccacgccaatccctcaatccaccattcact 380

                                                                       
Query: 181 gtttgttcatttcattttttaaatattctttgcctgtccccacctactcccttacctata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtttgttcatttcattttttaaatattctttgcctgtccccacctactcccttacctata 440

                                                                       
Query: 241 taagtgaatctataaaagattagtctttctggttctggattactccaatcaggatgatat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taagtgaatctataaaagattagtctttctggttctggattactccaatcaggatgatat 500

                                                                       
Query: 301 ttttctagttctgtgaaattacctgtttcatttcattatttcacttttaaattttatatc 360
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 501 ttttctagttctgtgaaattacctgtttcatttcattatttcactttaaaattttatatc 560

                                                                       
Query: 361 tttattcttcttttatacaatacatttcaactgcatcctttccttattcctaattttcac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttattcttcttttatacaatacatttcaactgcatcctttccttattcctaattttcac 620

                                                                       
Query: 421 tatataccccctcccccagaccaacctttatttcattttgcttcaaaaaagatcaactct 480
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 621 tatataccccctcccccagaccaacctttatttcatttcgcttcaaaaaagatcaactct 680

                                                                       
Query: 481 ctcagtgaaattaattgtagttgccataatatgatacaataatatgatgcatataacctc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctcagtgaaattaattgtagttgccataatatgatacaataatatgatgcatataacctc 740

                                                                       
Query: 541 atatgatggctcgacaaagaaacctaaaaggaggaaaaagataccacaagcagacaaaag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atatgatggctcgacaaagaaacctaaaaggaggaaaaagataccacaagcagacaaaag 800

                                                        
Query: 601 aatcagggatacccccactcccatcattaggaatcatttttaaca 645
           ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 801 aatcagggatacccccactcccatcgttaggaatcatttttaaca 845


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space:   657225
Effective search space used:   657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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