BAC Information

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BAC

Clone NameMSMg01-453C17
Chromosome7 (Build37)
Map Location 107,166,454 - 107,329,371
singlet/doubletdoublet
Overlap geneChrdl2, Pold3, 2610209A20Rik, Kcne3
Upstream geneUvrag, Dgat2, Mogat2, Mtap6, Serpinh1, Gdpd5, 2810406K13Rik, Rps3, Rnu15-b, EG449630, Arrb1, EG245190, Slco2b1, Olfr520, Olfr521, Neu3, Spcs2, Xrra1, EG330602
Downstream geneLOC631577, Pgm2l1, Gpx2-ps1, P4ha3, Ppme1, AU020772, Ucp3, Ucp2, Dnajb13, LOC667112, Chchd8, Mrpl48, LOC100041155, Rab6, LOC100041167, Plekhb1, B930006L02Rik, LOC100041204, Tnfrsf19l, Arhgef17, P2ry6, P2ry2, LOC100049539, EG435996, Fchsd2, EG622673
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-453C17.T7 (MSMg01no453_c17.b1)MSMg01-453C17.TJ (MSMg01no453_c17.g1)
ACCAG540248AG540249
length754753
length of high quality
(start - end)		708 (47 - 754)671 (78 - 748)
definitionCHROMAT_FILE: MSMg01no453_c17.b1 PHD_FILE: MSMg01no453_c17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:57 2005CHROMAT_FILE: MSMg01no453_c17.g1 PHD_FILE: MSMg01no453_c17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,166,454 - 107,167,155)(107,328,701 - 107,329,371)
sequence
NACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCCAAGGATGTGCGAGGATGGGAGAACAGGAGCCGGCCAGGGGG
ACACCCAGACAACAGGTCCCTGTTGGGAGGTCTTGAATTCATTTTCTGGG
TGATGCTAGGGGCTTCTGGCTCTCAGACCCTTGGCACCTTCTTTTTCCTC
ACAGACCAAGAGATGGAAGAGGCAGAAGCTCTAAGAGCCTGCGTGGTTAA
GCCAGTCTCTGAGGAGACTGGAGTGAGGAGCAAGTGACACAGTCCTCATC
TCCATTGGGCCTGCTCCTTCCTGGGTCTTTCCCTCTCTCTCCCCATTGTT
CCCCTAATGTCAGCTTTAGGTAGAACCCAGACGCAAACAGGGATGCAACT
CTCGCCTACAAGGCTCCAGCTGCCTTTTTCTTTTTTTTAATCCTTAGCAC
ATCTGAAGCCAATAAGCCATTTTTAAAAAGCTTTAGGAAATGTAGCCAGA
AAAACAGAAAGGAAACCATAACAGAAAATTGTAGACATGTCACATGGTGC
AGTTGACAAAGGCCAAGTTGTGTGATCTACTGGAGCTTACTCACGTCTCC
TTCCCCAGAGGTCACACATGTAGCTACTCATCTTCGGCCCAAAGGACAAA
GCACAGCCTGAACACCCTACCTCTCTCCACCATGGCCCCATCTTCACCAC
CTAAGCCACTTTCACCTCTCACCTAGTGAGACTGCTGCATGGGCCTGCCA
ACAG

CCCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTACACTTTCTGTCTGCTTGG
CAAGCTCATTCTTCAAGACCCTGCTCTATACCACCAGCTTAGAGCCGGTC
CAGAGACACCCCTCTCCCCTACTCAATAACTAGTCAGTTTCCCCTCTTGT
TTGTTACCAGAGTGCCTTCAAAACAGCCTCATTAGAGAACTGGGCCATTT
GGAATCTGTTTGTGAGTGTCGATGTGGGCCCAGTGTATCCCTGCACATAT
GCTTGGAGGTTTCAGGGCAGGGGCCTCATGAATTTCTTTATTCTTCAGGC
CTGTTTACATAGTGAGCACCAAAAAGAACAAGTGACTCAATCTCTCTCCT
ATAAGAGAGTACCCTCCCCAACTTATCCCCTAACAGCTTCATGGAATCAG
CTTTCAATGTTTTAATAGAAAACCAAAGTAGAAAAGACTCCCAGTTACCC
CAAGATAAGCTGCCTTAGATAGAGGGGAGGCCCCTTGAGCAGGTGGCATG
GGGCAAGAGAGGGAAATTCTGAGTCTCCTTTGGAAACCCAGACACTTCCC
ACATCTGATCTGAGCCCGTTTATCCAAAGGGCAAACATTCTTGGCCCCCA
GAGAACGGTAAATGGTTTTGCAATGCTCTTCCCTGTGTACCTACCAAAGG
TGTGGCCATCCACACCCACAGACGGCACACAGATAGCCCAAGTCTCAGCC
TGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no453_c17.b1 MSMg01no453_c17.b1 CHROMAT_FILE:
MSMg01no453_c17.b1 PHD_FILE: MSMg01no453_c17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:57 2005
         (708 letters)



>mm_chr7_107166250_107167355
          Length = 1106

 Score = 1288 bits (666), Expect = 0.0
 Identities = 694/704 (98%), Gaps = 2/704 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctccaaggatgtgcgaggatgggagaacaggagccggccagggggacacccagac 64
           |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 205 gaattctccaaggaagtgcgaggatgggagaacaggagcgggccagggggacacccagac 264

                                                                       
Query: 65  aacaggtccctgttgggaggtcttgaattcattttctgggtgatgctaggggcttctggc 124
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 265 aacaggtccctgttgggaggtcttgaattcattttctgggtgatgctgggggcttctggc 324

                                                                       
Query: 125 tctcagacccttggcaccttctttttcctcacagaccaagagatggaagaggcagaagct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 325 tctcagacccttggcaccttctttttcctcacagaccaagagatggaagagacagaagct 384

                                                                       
Query: 185 ctaagagcctgcgtggttaagccagtctctgaggagactggagtgaggagcaagtgacac 244
           ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 385 ctaagagcctgtgtggttaagccagtctctgaggagactggagtgaggagcaagagacac 444

                                                                       
Query: 245 agtcctcatctccattgggcctgctccttcctgggtctttccctctctctccccattgtt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agtcctcatctccattgggcctgctccttcctgggtctttccctctctctccccattgtt 504

                                                                       
Query: 305 cccctaatgtcagctttaggtagaacccagacgcaaacagggatgcaactctcgcctaca 364
           |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct: 505 cccctaatgtcagctttaggtagaacccagacacaaacagggatgcaactcccgcctaca 564

                                                                       
Query: 365 aggctccagctgcctttttcttttttttaatccttagcacatctgaagccaataagccat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aggctccagctgcctttttcttttttttaatccttagcacatctgaagccaataagccat 624

                                                                       
Query: 425 ttttaaaaagctttaggaaatgtagccagaaaaacagaaaggaaaccataacagaaaatt 484
           ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 625 ttttaaaaagctttaggaaatgtagccagaaaaaca--aaggaaaccataacagaaaatt 682

                                                                       
Query: 485 gtagacatgtcacatggtgcagttgacaaaggccaagttgtgtgatctactggagcttac 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gtagacatgtcacatggtgcagttgacaaaggccaagttgtgtgatctactggagcttac 742

                                                                       
Query: 545 tcacgtctccttccccagaggtcacacatgtagctactcatcttcggcccaaaggacaaa 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 tcacgtctccttccccagaggtcacacatgtagctactcatcttcggcccaaaggacaaa 802

                                                                       
Query: 605 gcacagcctgaacaccctacctctctccaccatggccccatcttcaccacctaagccact 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 gcacagcctgaacaccctacctctctccaccatggccccatcttcaccacctaagccact 862

                                                       
Query: 665 ttcacctctcacctagtgagactgctgcatgggcctgccaacag 708
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 ttcacctctcacctagtgagactgctgcatgggcctgccaacag 906


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 708
Length of database: 1106
Length adjustment: 10
Effective length of query: 698
Effective length of database: 1096
Effective search space:   765008
Effective search space used:   765008
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no453_c17.g1 MSMg01no453_c17.g1 CHROMAT_FILE:
MSMg01no453_c17.g1 PHD_FILE: MSMg01no453_c17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:57 2005
         (671 letters)



>mm_chr7_107328501_107329571
          Length = 1071

 Score = 1266 bits (655), Expect = 0.0
 Identities = 667/671 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctttacactttctgtctgcttggcaagctcattcttcaagaccctgctctataccaccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 871 ctttacactttctgtctgcttggcaagctcattcttcaagaccctgctctataccaccag 812

                                                                       
Query: 61  cttagagccggtccagagacacccctctcccctactcaataactagtcagtttcccctct 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 cttagagccggtccagaaacacccctctcccctactcaataactagtcagtttcccctct 752

                                                                       
Query: 121 tgtttgttaccagagtgccttcaaaacagcctcattagagaactgggccatttggaatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 tgtttgttaccagagtgccttcaaaacagcctcattagagaactgggccatttggaatct 692

                                                                       
Query: 181 gtttgtgagtgtcgatgtgggcccagtgtatccctgcacatatgcttggaggtttcaggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 gtttgtgagtgtcgatgtgggcccagtgtatccctgcacatatgcttggaggtttcaggg 632

                                                                       
Query: 241 caggggcctcatgaatttctttattcttcaggcctgtttacatagtgagcaccaaaaaga 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 caggggcctcatgcatttctttattcttcaggcctgtttacatagtgagcaccaaaaaga 572

                                                                       
Query: 301 acaagtgactcaatctctctcctataagagagtaccctccccaacttatcccctaacagc 360
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 571 acaagtgactcaatctctctcctataagagagtaccctccccaactcatcccctaacagc 512

                                                                       
Query: 361 ttcatggaatcagctttcaatgttttaatagaaaaccaaagtagaaaagactcccagtta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 ttcatggaatcagctttcaatgttttaatagaaaaccaaagtagaaaagactcccagtta 452

                                                                       
Query: 421 ccccaagataagctgccttagatagaggggaggccccttgagcaggtggcatggggcaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 ccccaagataagctgccttagatagaggggaggccccttgagcaggtggcatggggcaag 392

                                                                       
Query: 481 agagggaaattctgagtctcctttggaaacccagacacttcccacatctgatctgagccc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 agagggaaattctgagtctcctttggaaacccagacacttcccacatctgatctgagccc 332

                                                                       
Query: 541 gtttatccaaagggcaaacattcttggcccccagagaacggtaaatggttttgcaatgct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 gtttatccaaagggcaaacattcttggcccccagagaacggtaaatggttttgcaatgct 272

                                                                       
Query: 601 cttccctgtgtacctaccaaaggtgtggccatccacacccacagacggcacacagatagc 660
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 271 cttccctgtgtacctaccaaaggtgtggccatccacacccacagaaggcacacagatagc 212

                      
Query: 661 ccaagtctcag 671
           |||||||||||
Sbjct: 211 ccaagtctcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space:   701321
Effective search space used:   701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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