BAC Information

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BAC

Clone NameMSMg01-453H05
Chromosome7 (Build37)
Map Location 150,285,509 - 150,391,603
singlet/doubletdoublet
Overlap geneKcnq1
Upstream geneLOC100039728, EG668763, LOC100043616, EG665295, LOC100043617, Krtap5-2, LOC100039757, LOC100039767, EG665305, Krtap5-5, EG640223, LOC672428, LOC100039800, LOC100043627, LOC100043629, ENSMUSG00000038442, Krtap5-1, Krtap5-4, LOC270015, 6330512M04Rik, Ctsd, Syt8, Tnni2, Lsp1, ENSMUSG00000043795, Tnnt3, Mrpl23, Nctc1, H19, Igf2, Igf2as, Ins2, EG640264, EG624121, Th, Ascl2, Tspan32, R74862, Cd81, Tssc4, Trpm5
Downstream geneCdkn1c, Slc22a18, Phlda2, Nap1l4, Cars, Tnfrsf26, Tnfrsf22, Tnfrsf23, Osbpl5, Mrgprg, Mrgpre, Nadsyn1, Dhcr7, Gm498
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-453H05.T7 (MSMg01no453_h05.b1)MSMg01-453H05.TJ (MSMg01no453_h05.g1)
ACCAG540459AG540460
length736749
length of high quality
(start - end)		683 (54 - 736)563 (83 - 645)
definitionCHROMAT_FILE: MSMg01no453_h05.b1 PHD_FILE: MSMg01no453_h05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:19 2005CHROMAT_FILE: MSMg01no453_h05.g1 PHD_FILE: MSMg01no453_h05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(150,391,073 - 150,391,603)(150,285,509 - 150,286,071)
sequence
NNNAAAAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCAGTTCTATGACCATTTTAACATGGTTTTGGGGAAATG
ATAAAAGTTCATGGTTGAACTGAATATCCAGTTTTTCCATCTTGTCTCCT
CCCCACAGAACAAAACAAAACCTAGCATAACCTTTACATGTGGATTAGAA
AGCACCTATCAATAAATTTGAATGTCCACCTGATCCCCAGTTTCCCCCAC
TATCTGTTTGGTTTTTATGCTGACATTATACATCTGGTGTTCATCCTCAA
ACCTTGTTCATGTTCAAAGTTGCTTTGGTATTCTAGACTATCTGCATGCT
AGTCTTTGACTGGCTTTATACTGAATTTAGAAATCAATATTGAACCTTGT
AATTTGTGAACCTAATTATATATCTATATTTATTTTTTTGAAGTTTCATC
AGCATAGTTATATAGGCTCCAAAGGAGAGCTCTTTTGTCAAATAGATTTC
TATGTTTCACATGTTTAGTGCTACTCAGAATAGTATTTAAAAGTTTCCAA
TTCTGCCTTACTTGTAGCTAGAATTTAGAAGTAGAATTGCTTTTTGCAGA
GCTACTTTGTATATGCAACTGAATCCATATATTCTGGTGGCCAATCTGAC
ACATCAGATTTTCTATACAGACAACCAGGAAATCTACAAATAATGCCAGT
TTCATTTCTTTTCCAACTTGCTGTTTCTTACCTTAT

NTTTTCACAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTGGCAGATGGTGGTAG
CTCCCTGGAAGGGGGCCCTTCAGTATTTGCTAGAACTGAATCTATCAGCA
TAAGCCAAGTGCCAACAGCCCTCCTGCCTAGAAGTGCTTTTCATGCTTAG
ATGGGGCCTCAGGGGTATGTGTGGCTTTCTAGAGACCTGAGCAAGATCTT
AGGCAGCTTTACCACAGGTCTCAACTTCAGACTAAAGTAAGCACTATGTA
AGACTAAAGTAAGTTCTGATACCTCACTAGCACTGGCTTGGTGCTGGTGA
GGGAATGACAGGGTATCATTTGCAGAGACAGCCTGGTCACCAGTTAACCC
TCACACAACTTTGTTAAATTGTGTATAACTGTGGCCCCATGGGGTGGTTC
CTGGTGCCTTATTGGGCTGCTGGTCTCCCCTCTGAACACATCCTTCCCAC
TGTGTTCTTAAGAGACTGTCCTTGGAGCAGTCACAAAAGGGAGCTCACAA
AAGGCTGTTTGAATGTGTCTGACATACATGCACACTGCACACACTTGCAC
ACAACCCTCAGTATTCTCAGCCGGTTACCAGCTTGGCATCTTGGAAGAGG
AGAGTGTGGGTGGGTGTGGCCTATGGGTAAGGAGTGGCGGAATGACAGCA
TGCCTAGCTCCTTCTATTCTGCATATGGACTGGCTCAGAAGGAAACTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no453_h05.b1 MSMg01no453_h05.b1 CHROMAT_FILE:
MSMg01no453_h05.b1 PHD_FILE: MSMg01no453_h05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:19 2005
         (683 letters)



>mm_chr7_150391073_150392155
          Length = 1083

 Score = 1004 bits (519), Expect = 0.0
 Identities = 528/531 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagttctatgaccattttaacatggttttggggaaatgataaaagttcatggttg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 gaattcagttctatgaccattttaacatggttttggggaaatgataaaagttcatggttg 472

                                                                       
Query: 65  aactgaatatccagtttttccatcttgtctcctccccacagaacaaaacaaaacctagca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 aactgaatatccagtttttccatcttgtctcctccccacagaacaaaacaaaacctagca 412

                                                                       
Query: 125 taacctttacatgtggattagaaagcacctatcaataaatttgaatgtccacctgatccc 184
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 411 taacctttacatgtggattagaaagcacctgtcaataaatttgaatgtccacctgatccc 352

                                                                       
Query: 185 cagtttcccccactatctgtttggtttttatgctgacattatacatctggtgttcatcct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 cagtttcccccactatctgtttggtttttatgctgacattatacatctggtgttcatcct 292

                                                                       
Query: 245 caaaccttgttcatgttcaaagttgctttggtattctagactatctgcatgctagtcttt 304
           |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||
Sbjct: 291 caaaccttgttcatgttcaaagttgctttggtattctaggttatctgcatgctagtcttt 232

                                                                       
Query: 305 gactggctttatactgaatttagaaatcaatattgaaccttgtaatttgtgaacctaatt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 gactggctttatactgaatttagaaatcaatattgaaccttgtaatttgtgaacctaatt 172

                                                                       
Query: 365 atatatctatatttatttttttgaagtttcatcagcatagttatataggctccaaaggag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 atatatctatatttatttttttgaagtttcatcagcatagttatataggctccaaaggag 112

                                                                       
Query: 425 agctcttttgtcaaatagatttctatgtttcacatgtttagtgctactcagaatagtatt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 agctcttttgtcaaatagatttctatgtttcacatgtttagtgctactcagaatagtatt 52

                                                              
Query: 485 taaaagtttccaattctgccttacttgtagctagaatttagaagtagaatt 535
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51  taaaagtttccaattctgccttacttgtagctagaatttagaagtagaatt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1083
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1073
Effective search space:   722129
Effective search space used:   722129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no453_h05.g1 MSMg01no453_h05.g1 CHROMAT_FILE:
MSMg01no453_h05.g1 PHD_FILE: MSMg01no453_h05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:20 2005
         (563 letters)



>mm_chr7_150285309_150286271
          Length = 963

 Score = 1089 bits (563), Expect = 0.0
 Identities = 563/563 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtggcagatggtggtagctccctggaagggggcccttcagtatttgctagaactgaatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtggcagatggtggtagctccctggaagggggcccttcagtatttgctagaactgaatc 260

                                                                       
Query: 61  tatcagcataagccaagtgccaacagccctcctgcctagaagtgcttttcatgcttagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatcagcataagccaagtgccaacagccctcctgcctagaagtgcttttcatgcttagat 320

                                                                       
Query: 121 ggggcctcaggggtatgtgtggctttctagagacctgagcaagatcttaggcagctttac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggggcctcaggggtatgtgtggctttctagagacctgagcaagatcttaggcagctttac 380

                                                                       
Query: 181 cacaggtctcaacttcagactaaagtaagcactatgtaagactaaagtaagttctgatac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacaggtctcaacttcagactaaagtaagcactatgtaagactaaagtaagttctgatac 440

                                                                       
Query: 241 ctcactagcactggcttggtgctggtgagggaatgacagggtatcatttgcagagacagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcactagcactggcttggtgctggtgagggaatgacagggtatcatttgcagagacagc 500

                                                                       
Query: 301 ctggtcaccagttaaccctcacacaactttgttaaattgtgtataactgtggccccatgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctggtcaccagttaaccctcacacaactttgttaaattgtgtataactgtggccccatgg 560

                                                                       
Query: 361 ggtggttcctggtgccttattgggctgctggtctcccctctgaacacatccttcccactg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggtggttcctggtgccttattgggctgctggtctcccctctgaacacatccttcccactg 620

                                                                       
Query: 421 tgttcttaagagactgtccttggagcagtcacaaaagggagctcacaaaaggctgtttga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgttcttaagagactgtccttggagcagtcacaaaagggagctcacaaaaggctgtttga 680

                                                                       
Query: 481 atgtgtctgacatacatgcacactgcacacacttgcacacaaccctcagtattctcagcc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atgtgtctgacatacatgcacactgcacacacttgcacacaaccctcagtattctcagcc 740

                                  
Query: 541 ggttaccagcttggcatcttgga 563
           |||||||||||||||||||||||
Sbjct: 741 ggttaccagcttggcatcttgga 763


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space:   527009
Effective search space used:   527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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